RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 NPEPPSP55786 919 aa15.72■□□□□ 0.11
VPS33A-209ENST00000544349 KCNA1Q09470 495 aa15.72■□□□□ 0.11
VPS33A-209ENST00000544349 TBC1D8BQ0IIM8 1120 aa15.72■□□□□ 0.11
VPS33A-209ENST00000544349 ADAM9Q13443 819 aa15.72■□□□□ 0.11
VPS33A-209ENST00000544349 VWA3BQ502W6 1294 aa15.72■□□□□ 0.11
VPS33A-209ENST00000544349 CHADLQ6NUI6 762 aa15.72■□□□□ 0.11
VPS33A-209ENST00000544349 CC2D1AQ6P1N0 951 aaPredicted RBP15.72■□□□□ 0.11
VPS33A-209ENST00000544349 EEPD1Q7L9B9 569 aa15.72■□□□□ 0.11
VPS33A-209ENST00000544349 SRGAP1Q7Z6B7 1085 aa15.72■□□□□ 0.11
VPS33A-209ENST00000544349 GPR161Q8N6U8 529 aaKnown RBP15.72■□□□□ 0.11
VPS33A-209ENST00000544349 PARD6BQ9BYG5 372 aa15.72■□□□□ 0.11
VPS33A-209ENST00000544349 TYW1Q9NV66 732 aaKnown RBP15.72■□□□□ 0.11
VPS33A-209ENST00000544349 ARGLU1Q9NWB6 273 aaPredicted RBP15.72■□□□□ 0.11
VPS33A-209ENST00000544349 LARSQ9P2J5 1176 aaKnown RBP15.72■□□□□ 0.11
VPS33A-209ENST00000544349 LUC7L2Q9Y383 392 aaKnown RBP15.72■□□□□ 0.11
VPS33A-209ENST00000544349 EPN1Q9Y6I3 576 aaPredicted RBP15.72■□□□□ 0.11
VPS33A-209ENST00000544349 UBE4BO95155 1302 aa15.72■□□□□ 0.11
VPS33A-209ENST00000544349 SYNGAP1Q96PV0 1343 aa15.72■□□□□ 0.11
VPS33A-209ENST00000544349 MYH9P35579 1960 aaKnown RBP15.71■□□□□ 0.11
VPS33A-209ENST00000544349 MARSP56192 900 aaKnown RBP15.71■□□□□ 0.11
VPS33A-209ENST00000544349 CHMP4BP1P59074 171 aa15.71■□□□□ 0.11
VPS33A-209ENST00000544349 BMS1Q14692 1282 aaKnown RBP15.71■□□□□ 0.11
VPS33A-209ENST00000544349 ZC2HC1CQ53FD0 456 aaPredicted RBP15.71■□□□□ 0.11
VPS33A-209ENST00000544349 STXBP4Q6ZWJ1 553 aa15.71■□□□□ 0.11
VPS33A-209ENST00000544349 OR8K1Q8NGG5 319 aa15.71■□□□□ 0.11
VPS33A-209ENST00000544349 MORC4Q8TE76 937 aa15.71■□□□□ 0.11
VPS33A-209ENST00000544349 RABGGTAQ92696 567 aa15.71■□□□□ 0.11
VPS33A-209ENST00000544349 PTPN18Q99952 460 aa15.71■□□□□ 0.11
VPS33A-209ENST00000544349 NDST4Q9H3R1 872 aa15.71■□□□□ 0.11
VPS33A-209ENST00000544349 MORF4L1Q9UBU8 362 aa15.71■□□□□ 0.11
VPS33A-209ENST00000544349 ZHX1Q9UKY1 873 aaPredicted RBP15.71■□□□□ 0.11
VPS33A-209ENST00000544349 LOC102724159A0A0B4J2E5 919 aa15.71■□□□□ 0.11
VPS33A-209ENST00000544349 CTAGE9A4FU28 777 aa15.71■□□□□ 0.11
VPS33A-209ENST00000544349 CETN3O15182 167 aa15.71■□□□□ 0.11
VPS33A-209ENST00000544349 FARP2O94887 1054 aaPredicted RBP15.71■□□□□ 0.11
VPS33A-209ENST00000544349 TBC1D8O95759 1140 aa15.71■□□□□ 0.11
VPS33A-209ENST00000544349 MAPTP10636 758 aaKnown RBP15.71■□□□□ 0.11
VPS33A-209ENST00000544349 NR2F2P24468 414 aa15.71■□□□□ 0.11
VPS33A-209ENST00000544349 GABPB1Q06547 395 aaPredicted RBP15.71■□□□□ 0.11
VPS33A-209ENST00000544349 NEDD9Q14511 834 aa15.71■□□□□ 0.11
VPS33A-209ENST00000544349 PWP2Q15269 919 aaKnown RBP15.71■□□□□ 0.11
VPS33A-209ENST00000544349 CCDC40Q4G0X9 1142 aa15.71■□□□□ 0.11
VPS33A-209ENST00000544349 STRA6Q9BX79 667 aa15.71■□□□□ 0.11
VPS33A-209ENST00000544349 PCDHB13Q9Y5F0 798 aa15.71■□□□□ 0.11
VPS33A-209ENST00000544349 IGSF9BQ9UPX0 1349 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 TGFB1I1O43294 461 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 PLS3P13797 630 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 HUNKP57058 714 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 FKBP15Q5T1M5 1219 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 ERGIC2Q96RQ1 377 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 NAPGQ99747 312 aaPredicted RBP15.7■□□□□ 0.1
VPS33A-209ENST00000544349 ANKZF1Q9H8Y5 726 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 MAFBQ9Y5Q3 323 aaPredicted RBP15.7■□□□□ 0.1
VPS33A-209ENST00000544349 ZMYM2Q9UBW7 1377 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 ARID2Q68CP9 1835 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 PPP1R37O75864 691 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 AMPD2Q01433 879 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 PRKCEQ02156 737 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 MEA1Q16626 185 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 KCNV1Q6PIU1 500 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 CEP170P1Q96L14 293 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 DRC1Q96MC2 740 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 PARK7Q99497 189 aaKnown RBP15.7■□□□□ 0.1
VPS33A-209ENST00000544349 ZNF302Q9NR11 478 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 GUCA1BQ9UMX6 200 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 MCM3APO60318 1980 aa15.7■□□□□ 0.1
VPS33A-209ENST00000544349 PLXNB2O15031 1838 aa15.69■□□□□ 0.1
VPS33A-209ENST00000544349 IGKV6D-21A0A0A0MT36 114 aa15.69■□□□□ 0.1
VPS33A-209ENST00000544349 GSTTP1A0A1W2PQM5 241 aa15.69■□□□□ 0.1
VPS33A-209ENST00000544349 TRIM21P19474 475 aaKnown RBP15.69■□□□□ 0.1
VPS33A-209ENST00000544349 XKR3Q5GH77 459 aa15.69■□□□□ 0.1
VPS33A-209ENST00000544349 KSR1Q8IVT5 923 aa15.69■□□□□ 0.1
VPS33A-209ENST00000544349 PNKPQ96T60 521 aa15.69■□□□□ 0.1
VPS33A-209ENST00000544349 GPRC5CQ9NQ84 441 aa15.69■□□□□ 0.1
VPS33A-209ENST00000544349 RCCD1A6NED2 376 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 ASB14A6NK59 587 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 K7ENM7 598 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 EPHB6O15197 1021 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 ARIH2O95376 493 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 GGPS1O95749 300 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 NR3C1P04150 777 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 ATP4AP20648 1035 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 RPL13P26373 211 aaKnown RBP15.68■□□□□ 0.1
VPS33A-209ENST00000544349 NFIL3Q16649 462 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 LY6KQ17RY6 165 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 METTL7BQ6UX53 244 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 TRIM59Q8IWR1 403 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 NUP58Q9BVL2 599 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 SEPT9Q9UHD8 586 aaPredicted RBP15.68■□□□□ 0.1
VPS33A-209ENST00000544349 PLXNA1Q9UIW2 1896 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 CLIC2O15247 247 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 STRNO43815 780 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 ALCAMQ13740 583 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 ZNF792Q3KQV3 632 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 FAM102BQ5T8I3 360 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 FRMD5Q7Z6J6 570 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 GPIHBP1Q8IV16 184 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 ABRAQ8N0Z2 381 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 PDLIM7Q9NR12 457 aa15.68■□□□□ 0.1
VPS33A-209ENST00000544349 CYP26B1Q9NR63 512 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms