RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 PSMD10O75832 226 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 NR1D1P20393 614 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 LSP1P33241 339 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 CASP4P49662 377 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 TNNC1P63316 161 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 HLTFQ14527 1009 aaKnown RBP eCLIP13.64□□□□□ -0.23
RNF4-222ENST00000541204 ICE2Q659A1 982 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 MAATS1Q7Z4T9 603 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 IL31RAQ8NI17 732 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 HSD17B14Q9BPX1 270 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 TAOK3Q9H2K8 898 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 UNC45AQ9H3U1 944 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 COL20A1Q9P218 1284 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 PLAAQ9Y263 795 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 PCDHB13Q9Y5F0 798 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 COL2A1P02458 1487 aaPredicted RBP13.63□□□□□ -0.23
RNF4-222ENST00000541204 A6NNZ2 444 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 FAM13AO94988 1023 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 EYA4O95677 639 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 ERVK-9P63128 1117 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 PPARDQ03181 441 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 TUBB8Q3ZCM7 444 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 FAM83AQ86UY5 434 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 SPAG5Q96R06 1193 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 AP1M1Q9BXS5 423 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 TMEM59LQ9UK28 342 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 FEM1BQ9UK73 627 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 IPO5O00410 1097 aaKnown RBP13.63□□□□□ -0.23
RNF4-222ENST00000541204 CEP104O60308 925 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 AKAP3O75969 853 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 KIF4AO95239 1232 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 UCHL3P15374 230 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 GRIPAP1Q4V328 841 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 DALRD3Q5D0E6 543 aaKnown RBP13.63□□□□□ -0.23
RNF4-222ENST00000541204 CEP85LQ5SZL2 805 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 DDX42Q86XP3 938 aaKnown RBP eCLIP13.63□□□□□ -0.23
RNF4-222ENST00000541204 CD302Q8IX05 232 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 ATP6V1G3Q96LB4 118 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 POLR3CQ9BUI4 534 aaPredicted RBP13.63□□□□□ -0.23
RNF4-222ENST00000541204 WDR11Q9BZH6 1224 aa13.63□□□□□ -0.23
RNF4-222ENST00000541204 TAF1DQ9H5J8 278 aaPredicted RBP13.63□□□□□ -0.23
RNF4-222ENST00000541204 ITGB5P18084 799 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 PRELPP51888 382 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 EDRF1Q3B7T1 1238 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 DPY19L2P1Q6NXN4 242 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 FAM160B2Q86V87 743 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 ZC3H3Q8IXZ2 948 aaKnown RBP13.62□□□□□ -0.23
RNF4-222ENST00000541204 RBM46Q8TBY0 533 aaKnown RBP13.62□□□□□ -0.23
RNF4-222ENST00000541204 CENPHQ9H3R5 247 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 ARMCX3Q9UH62 379 aaPredicted RBP13.62□□□□□ -0.23
RNF4-222ENST00000541204 SYNPO2Q9UMS6 1093 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 BCS1LQ9Y276 419 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 PHF20L1A8MW92 1017 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 TBC1D12O60347 775 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 FLOT1O75955 427 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 ECHS1P30084 290 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 COG2Q14746 738 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 FBXW10Q5XX13 1052 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 PLCD3Q8N3E9 789 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 SLC5A5Q92911 643 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 ISCUQ9H1K1 167 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 EPN3Q9H201 632 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 PGAP2Q9UHJ9 254 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 NAGPAQ9UK23 515 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 ATAD5Q96QE3 1844 aa13.62□□□□□ -0.23
RNF4-222ENST00000541204 NR3C1P04150 777 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 PON1P27169 355 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 HPDP32754 393 aaPredicted RBP13.61□□□□□ -0.23
RNF4-222ENST00000541204 HSPA9P38646 679 aaKnown RBP13.61□□□□□ -0.23
RNF4-222ENST00000541204 SEC24CP53992 1094 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 TRAF1Q13077 416 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 MTMR2Q13614 643 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 ALKBH5Q6P6C2 394 aaKnown RBP13.61□□□□□ -0.23
RNF4-222ENST00000541204 PPP4R3CPQ6ZMV5 832 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 OR2W6PQ8NHA6 318 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 LXNQ9BS40 222 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 ASTN1O14525 1302 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 ZNF536O15090 1300 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 BTNL10A8MVZ5 291 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 TMCO5BA8MYB1 307 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 PPP1R37O75864 691 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 AFPP02771 609 aaKnown RBP13.61□□□□□ -0.23
RNF4-222ENST00000541204 EIF2AK2P19525 551 aaKnown RBP13.61□□□□□ -0.23
RNF4-222ENST00000541204 HSD17B3P37058 310 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 PTGER2P43116 358 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 ITGB3BPQ13352 177 aaPredicted RBP13.61□□□□□ -0.23
RNF4-222ENST00000541204 EXOC3L4Q17RC7 722 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 FKBP1CQ5VVH2 108 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 NAA35Q5VZE5 725 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 B4GALNT4Q76KP1 1039 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 EPM2AIP1Q7L775 607 aaPredicted RBP13.61□□□□□ -0.23
RNF4-222ENST00000541204 LRRC57Q8N9N7 239 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 SCFD2Q8WU76 684 aa13.61□□□□□ -0.23
RNF4-222ENST00000541204 CALUO43852 315 aaPredicted RBP13.6□□□□□ -0.23
RNF4-222ENST00000541204 ICAM1P05362 532 aa13.6□□□□□ -0.23
RNF4-222ENST00000541204 GTF2A1P52655 376 aaPredicted RBP13.6□□□□□ -0.23
RNF4-222ENST00000541204 PPP2R5CQ13362 524 aa13.6□□□□□ -0.23
RNF4-222ENST00000541204 C10orf76Q5T2E6 689 aa13.6□□□□□ -0.23
RNF4-222ENST00000541204 C1orf186Q6ZWK4 172 aa13.6□□□□□ -0.23
RNF4-222ENST00000541204 MICALL2Q8IY33 904 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms