RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 TRAPPC12Q8WVT3 735 aa19.44■□□□□ 0.7
CLSTN3-210ENST00000540931 IFT74Q96LB3 600 aa19.44■□□□□ 0.7
CLSTN3-210ENST00000540931 SUCLA2Q9P2R7 463 aaPredicted RBP19.44■□□□□ 0.7
CLSTN3-210ENST00000540931 H0YCG3 227 aa19.43■□□□□ 0.7
CLSTN3-210ENST00000540931 USO1O60763 962 aaKnown RBP19.43■□□□□ 0.7
CLSTN3-210ENST00000540931 SYN1P17600 705 aa19.43■□□□□ 0.7
CLSTN3-210ENST00000540931 MAGEA10P43363 369 aaPredicted RBP19.43■□□□□ 0.7
CLSTN3-210ENST00000540931 SYKP43405 635 aa19.43■□□□□ 0.7
CLSTN3-210ENST00000540931 UBE2HP62256 183 aa19.43■□□□□ 0.7
CLSTN3-210ENST00000540931 MRPS6P82932 125 aaKnown RBP19.43■□□□□ 0.7
CLSTN3-210ENST00000540931 ZNF200P98182 395 aaPredicted RBP19.43■□□□□ 0.7
CLSTN3-210ENST00000540931 PPIGQ13427 754 aaKnown RBP eCLIP19.43■□□□□ 0.79e-7■□□□□ 11.3
CLSTN3-210ENST00000540931 RINT1Q6NUQ1 792 aa19.43■□□□□ 0.7
CLSTN3-210ENST00000540931 LRRC8DQ7L1W4 858 aa19.43■□□□□ 0.7
CLSTN3-210ENST00000540931 DNAJB3Q8WWF6 145 aa19.43■□□□□ 0.7
CLSTN3-210ENST00000540931 CTAGE1Q96RT6 745 aa19.43■□□□□ 0.7
CLSTN3-210ENST00000540931 LARSQ9P2J5 1176 aaKnown RBP19.43■□□□□ 0.7
CLSTN3-210ENST00000540931 TRPV2Q9Y5S1 764 aa19.43■□□□□ 0.7
CLSTN3-210ENST00000540931 POLR2DO15514 142 aaKnown RBP19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 SSBP05455 408 aaKnown RBP eCLIP19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 KRT18P05783 430 aaKnown RBP19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 SLFN14P0C7P3 912 aa19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 PTMSP20962 102 aa19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 CRYBB1P53674 252 aaPredicted RBP19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 SLC12A3P55017 1021 aa19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 TRIM71Q2Q1W2 868 aaKnown RBP19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 C1orf186Q6ZWK4 172 aa19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 USP49Q70CQ1 688 aa19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 Q7L0L9 218 aa19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 FSIP1Q8NA03 581 aa19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 NFKBIZQ9BYH8 718 aa19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 CELF4Q9BZC1 486 aaKnown RBP19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 GCOM2Q9BZD3 368 aaPredicted RBP19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 FAM49AQ9H0Q0 323 aaPredicted RBP19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 RNF216Q9NWF9 866 aaPredicted RBP19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 HPSEQ9Y251 543 aa19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 COL4A3BPQ9Y5P4 624 aa19.42■□□□□ 0.7
CLSTN3-210ENST00000540931 ZBTB39O15060 712 aa19.41■□□□□ 0.7
CLSTN3-210ENST00000540931 EFCAB14O75071 495 aa19.41■□□□□ 0.7
CLSTN3-210ENST00000540931 IQCF3P0C7M6 154 aa19.41■□□□□ 0.7
CLSTN3-210ENST00000540931 PFKFB1P16118 471 aa19.41■□□□□ 0.7
CLSTN3-210ENST00000540931 SMTNP53814 917 aa19.41■□□□□ 0.7
CLSTN3-210ENST00000540931 HIC1Q14526 733 aa19.41■□□□□ 0.7
CLSTN3-210ENST00000540931 TDHQ8IZJ6 230 aa19.41■□□□□ 0.7
CLSTN3-210ENST00000540931 PDILTQ8N807 584 aa19.41■□□□□ 0.7
CLSTN3-210ENST00000540931 APBB2Q92870 758 aa19.41■□□□□ 0.7
CLSTN3-210ENST00000540931 SCLT1Q96NL6 688 aa19.41■□□□□ 0.7
CLSTN3-210ENST00000540931 PLIN2Q99541 437 aa19.41■□□□□ 0.7
CLSTN3-210ENST00000540931 C2orf40Q9H1Z8 148 aa19.41■□□□□ 0.7
CLSTN3-210ENST00000540931 GDPD2Q9HCC8 539 aa19.41■□□□□ 0.7
CLSTN3-210ENST00000540931 BLOC1S4Q9NUP1 217 aa19.41■□□□□ 0.7
CLSTN3-210ENST00000540931 STXBP5LQ9Y2K9 1186 aa19.41■□□□□ 0.7
CLSTN3-210ENST00000540931 TMEM150BA6NC51 233 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 TRIM43BA6NCK2 446 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 TBCAO75347 108 aaKnown RBP19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 ARL2P36404 184 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 PHKA2P46019 1235 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 CLCN3P51790 818 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 FAM160A1Q05DH4 1040 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 NCBP1Q09161 790 aaKnown RBP19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 ZNF618Q5T7W0 954 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 FAM102BQ5T8I3 360 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 CNNM4Q6P4Q7 775 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 RUFY4Q6ZNE9 571 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 SRGAP1Q7Z6B7 1085 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 GPBP1Q86WP2 473 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 RHPN2Q8IUC4 686 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 ELOA2Q8IYF1 753 aaPredicted RBP19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 LRRC71Q8N4P6 559 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 PRPF31Q8WWY3 499 aaKnown RBP19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 DHX38Q92620 1227 aaKnown RBP19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 TRIM43Q96BQ3 446 aaPredicted RBP19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 DHX58Q96C10 678 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 TIGD1Q96MW7 591 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 KBTBD4Q9NVX7 518 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 MTMR10Q9NXD2 777 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 SEL1LQ9UBV2 794 aa19.4■□□□□ 0.7
CLSTN3-210ENST00000540931 TRIP12Q14669 1992 aaPredicted RBP19.39■□□□□ 0.7
CLSTN3-210ENST00000540931 A0A1B0GVL5 298 aa19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 GPR182O15218 404 aa19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 ACTN1P12814 892 aa19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 NAMPTP43490 491 aa19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 EFNA5P52803 228 aa19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 NLRP11P59045 1033 aaKnown RBP19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 FPGSQ05932 587 aa19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 DMP1Q13316 513 aaPredicted RBP19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 MCM6Q14566 821 aa19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 E2F4Q16254 413 aa19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 KCNK18Q7Z418 384 aa19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 ZBTB8OSQ8IWT0 167 aa19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 NLRP7Q8WX94 980 aa19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 CCDC47Q96A33 483 aaKnown RBP19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 SH2D3AQ9BRG2 576 aa19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 PANK2Q9BZ23 570 aa19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 GTPBP4Q9BZE4 634 aaKnown RBP19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 PPP1R12CQ9BZL4 782 aa19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 MTIF3Q9H2K0 278 aaKnown RBP19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 XPNPEP1Q9NQW7 623 aa19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 CDY2AQ9Y6F7 541 aa19.39■□□□□ 0.69
CLSTN3-210ENST00000540931 ARID2Q68CP9 1835 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms