RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 CLP1Q92989 425 aaKnown RBP15.89■□□□□ 0.13
USP28-209ENST00000540925 YME1L1Q96TA2 773 aa15.89■□□□□ 0.13
USP28-209ENST00000540925 C17orf80Q9BSJ5 609 aa15.89■□□□□ 0.13
USP28-209ENST00000540925 KIF3AQ9Y496 699 aa15.89■□□□□ 0.13
USP28-209ENST00000540925 ADGRA3Q8IWK6 1321 aa15.89■□□□□ 0.13
USP28-209ENST00000540925 PRRC2BQ5JSZ5 2229 aaKnown RBP15.88■□□□□ 0.13
USP28-209ENST00000540925 OR52Z1P0C646 297 aa15.88■□□□□ 0.13
USP28-209ENST00000540925 RFC5P40937 340 aa15.88■□□□□ 0.13
USP28-209ENST00000540925 SARSP49591 514 aaKnown RBP15.88■□□□□ 0.13
USP28-209ENST00000540925 CDC42EP1Q00587 391 aa15.88■□□□□ 0.13
USP28-209ENST00000540925 NFX1Q12986 1120 aaKnown RBP15.88■□□□□ 0.13
USP28-209ENST00000540925 NBR1Q14596 966 aa15.88■□□□□ 0.13
USP28-209ENST00000540925 ODR4Q5SWX8 454 aa15.88■□□□□ 0.13
USP28-209ENST00000540925 CEP170P1Q96L14 293 aa15.88■□□□□ 0.13
USP28-209ENST00000540925 ADAM2Q99965 735 aa15.88■□□□□ 0.13
USP28-209ENST00000540925 JPH2Q9BR39 696 aaPredicted RBP15.88■□□□□ 0.13
USP28-209ENST00000540925 SUCLA2Q9P2R7 463 aaPredicted RBP15.88■□□□□ 0.13
USP28-209ENST00000540925 GTF3C3Q9Y5Q9 886 aa15.88■□□□□ 0.13
USP28-209ENST00000540925 RALGAPA2Q2PPJ7 1873 aa15.88■□□□□ 0.13
USP28-209ENST00000540925 NLRC5Q86WI3 1866 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 C5orf67F2Z3F1 127 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 IGFBP4P22692 258 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 DNM2P50570 870 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 FXR2P51116 673 aaKnown RBP eCLIP15.87■□□□□ 0.13
USP28-209ENST00000540925 SLC24A5Q71RS6 500 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 OTUD6AQ7L8S5 288 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 ZNF410Q86VK4 478 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 TPH2Q8IWU9 490 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 EXOC8Q8IYI6 725 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 GDPD5Q8WTR4 605 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 SLC7A3Q8WY07 619 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 ZNF668Q96K58 619 aaPredicted RBP15.87■□□□□ 0.13
USP28-209ENST00000540925 SAMD11Q96NU1 681 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 POLR3CQ9BUI4 534 aaPredicted RBP15.87■□□□□ 0.13
USP28-209ENST00000540925 IFT122Q9HBG6 1241 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 XPNPEP1Q9NQW7 623 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 C1orf112Q9NSG2 853 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 ANKEF1Q9NU02 776 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 LMCD1Q9NZU5 365 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 PCDHB6Q9Y5E3 794 aa15.87■□□□□ 0.13
USP28-209ENST00000540925 GAS2O43903 313 aaKnown RBP15.86■□□□□ 0.13
USP28-209ENST00000540925 XRCC6P12956 609 aaKnown RBP eCLIP15.86■□□□□ 0.13
USP28-209ENST00000540925 EMC2Q15006 297 aa15.86■□□□□ 0.13
USP28-209ENST00000540925 EPC2Q52LR7 807 aa15.86■□□□□ 0.13
USP28-209ENST00000540925 CATSPER3Q86XQ3 398 aa15.86■□□□□ 0.13
USP28-209ENST00000540925 KSR1Q8IVT5 923 aa15.86■□□□□ 0.13
USP28-209ENST00000540925 CMTR2Q8IYT2 770 aaKnown RBP15.86■□□□□ 0.13
USP28-209ENST00000540925 ELAC1Q9H777 363 aaKnown RBP15.86■□□□□ 0.13
USP28-209ENST00000540925 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.86■□□□□ 0.13
USP28-209ENST00000540925 MTUS1Q9ULD2 1270 aa15.86■□□□□ 0.13
USP28-209ENST00000540925 NOL7Q9UMY1 257 aaKnown RBP15.86■□□□□ 0.13
USP28-209ENST00000540925 A0A087WZ62 844 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 H3BNC9 293 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 MED24O75448 989 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 CSDE1O75534 798 aaKnown RBP15.85■□□□□ 0.13
USP28-209ENST00000540925 RPA1P27694 616 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 TECP42680 631 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 RARRES1P49788 294 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 POLGP54098 1239 aaPredicted RBP15.85■□□□□ 0.13
USP28-209ENST00000540925 GNL2Q13823 731 aaKnown RBP15.85■□□□□ 0.13
USP28-209ENST00000540925 XKR9Q5GH70 373 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 RHPN2Q8IUC4 686 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 TMEM192Q8IY95 271 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 FIBCD1Q8N539 461 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 IGSF22Q8N9C0 903 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 FBXO22Q8NEZ5 403 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 PRPF31Q8WWY3 499 aaKnown RBP15.85■□□□□ 0.13
USP28-209ENST00000540925 NLRP7Q8WX94 980 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 FDXACB1Q9BRP7 624 aaPredicted RBP15.85■□□□□ 0.13
USP28-209ENST00000540925 TRAIPQ9BWF2 469 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 GCOM2Q9BZD3 368 aaPredicted RBP15.85■□□□□ 0.13
USP28-209ENST00000540925 TUFT1Q9NNX1 390 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 PRDM6Q9NQX0 595 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 RNF19AQ9NV58 838 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 SMC3Q9UQE7 1217 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.85■□□□□ 0.13
USP28-209ENST00000540925 COL4A3BPQ9Y5P4 624 aa15.85■□□□□ 0.13
USP28-209ENST00000540925 FNDC1Q4ZHG4 1894 aaPredicted RBP15.84■□□□□ 0.13
USP28-209ENST00000540925 DENND3A2RUS2 1198 aa15.84■□□□□ 0.13
USP28-209ENST00000540925 STAG3L1P0CL83 205 aa15.84■□□□□ 0.13
USP28-209ENST00000540925 FGFR4P22455 802 aa15.84■□□□□ 0.13
USP28-209ENST00000540925 GATMP50440 423 aa15.84■□□□□ 0.13
USP28-209ENST00000540925 PTGDRQ13258 359 aa15.84■□□□□ 0.13
USP28-209ENST00000540925 PDIA5Q14554 519 aa15.84■□□□□ 0.13
USP28-209ENST00000540925 IL17AQ16552 155 aa15.84■□□□□ 0.13
USP28-209ENST00000540925 ZNF598Q86UK7 904 aaKnown RBP15.84■□□□□ 0.13
USP28-209ENST00000540925 FERMT3Q86UX7 667 aa15.84■□□□□ 0.13
USP28-209ENST00000540925 TMEM143Q96AN5 459 aa15.84■□□□□ 0.13
USP28-209ENST00000540925 TMEM161AQ9NX61 479 aa15.84■□□□□ 0.13
USP28-209ENST00000540925 DBR1Q9UK59 544 aaKnown RBP15.84■□□□□ 0.13
USP28-209ENST00000540925 MRPL42Q9Y6G3 142 aaKnown RBP15.84■□□□□ 0.13
USP28-209ENST00000540925 KIAA1671Q9BY89 1806 aa15.84■□□□□ 0.13
USP28-209ENST00000540925 LAD1O00515 517 aa15.83■□□□□ 0.12
USP28-209ENST00000540925 GTPBP6O43824 516 aaPredicted RBP15.83■□□□□ 0.12
USP28-209ENST00000540925 DGAT1O75907 488 aa15.83■□□□□ 0.12
USP28-209ENST00000540925 RB1P06400 928 aa15.83■□□□□ 0.12
USP28-209ENST00000540925 ATF7P17544 494 aaPredicted RBP15.83■□□□□ 0.12
USP28-209ENST00000540925 MUTP22033 750 aa15.83■□□□□ 0.12
USP28-209ENST00000540925 ARL2P36404 184 aa15.83■□□□□ 0.12
USP28-209ENST00000540925 BMPR1AP36894 532 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms