RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.48□□□□□ -0.25
AP003559.1-201ENST00000540906 OTUD6AQ7L8S5 288 aa13.48□□□□□ -0.25
AP003559.1-201ENST00000540906 TMEM161BQ8NDZ6 487 aa13.48□□□□□ -0.25
AP003559.1-201ENST00000540906 DRC1Q96MC2 740 aa13.48□□□□□ -0.25
AP003559.1-201ENST00000540906 PARK7Q99497 189 aaKnown RBP13.48□□□□□ -0.25
AP003559.1-201ENST00000540906 DNAJC7Q99615 494 aa13.48□□□□□ -0.25
AP003559.1-201ENST00000540906 CBWD1Q9BRT8 395 aa13.48□□□□□ -0.25
AP003559.1-201ENST00000540906 GBP3Q9H0R5 595 aa13.48□□□□□ -0.25
AP003559.1-201ENST00000540906 POLR3FQ9H1D9 316 aaPredicted RBP13.48□□□□□ -0.25
AP003559.1-201ENST00000540906 LARSQ9P2J5 1176 aaKnown RBP13.48□□□□□ -0.25
AP003559.1-201ENST00000540906 USP20Q9Y2K6 914 aa13.48□□□□□ -0.25
AP003559.1-201ENST00000540906 R3HCC1Q9Y3T6 440 aaKnown RBP13.48□□□□□ -0.25
AP003559.1-201ENST00000540906 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.48□□□□□ -0.25
AP003559.1-201ENST00000540906 DOCK3Q8IZD9 2030 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 ANKRD63C9JTQ0 380 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 FANCGO15287 622 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 SNAI1O95863 264 aaPredicted RBP13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 TGFB3P10600 412 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 MARK3P27448 753 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 CCNA1P78396 465 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 GTF2BQ00403 316 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 DRP2Q13474 957 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 GRB14Q14449 540 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 EMC2Q15006 297 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 NFIL3Q16649 462 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 DNTTIP2Q5QJE6 756 aaKnown RBP13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 TAS1R3Q7RTX0 852 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 FRMD5Q7Z6J6 570 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 SAPCD2Q86UD0 394 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 ACRBPQ8NEB7 543 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 NPLOC4Q8TAT6 608 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 ASAP3Q8TDY4 903 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 TMEM143Q96AN5 459 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 CCDC51Q96ER9 411 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 ZIC5Q96T25 663 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 TIPINQ9BVW5 301 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 PCIF1Q9H4Z3 704 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 MMRN2Q9H8L6 949 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 MLXIPQ9HAP2 919 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 PPP2R2CQ9Y2T4 447 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 PASKQ96RG2 1323 aa13.47□□□□□ -0.25
AP003559.1-201ENST00000540906 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 CCDC169A6NNP5 214 aa13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 SLC16A3O15427 465 aaKnown RBP13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 DGAT1O75907 488 aa13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 TXNP10599 105 aaKnown RBP13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 ACTN1P12814 892 aa13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 TNNT1P13805 278 aa13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 TRIM21P19474 475 aaKnown RBP13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 HTRA3P83110 453 aa13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 GRM1Q13255 1194 aa13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 TARBP2Q15633 366 aaKnown RBP13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 SLC39A4Q6P5W5 647 aa13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 SEPT1Q8WYJ6 367 aa13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 BAP1Q92560 729 aa13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 SLC35C1Q96A29 364 aa13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 ZBTB10Q96DT7 871 aa13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 LSM14BQ9BX40 385 aaKnown RBP13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 ST6GALNAC4Q9H4F1 302 aa13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 ATP6V0A4Q9HBG4 840 aa13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 ARMCX3Q9UH62 379 aaPredicted RBP13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 LUC7L2Q9Y383 392 aaKnown RBP13.46□□□□□ -0.25
AP003559.1-201ENST00000540906 ZBTB42B2RXF5 422 aa13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 DKC1O60832 514 aaKnown RBP eCLIP13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 LGR5O75473 907 aa13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 STAT5BP51692 787 aa13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 ARHGAP1Q07960 439 aa13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 FAM110CQ1W6H9 321 aa13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 DCAF17Q5H9S7 520 aaPredicted RBP13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 FAM186BQ8IYM0 893 aa13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 SYCP3Q8IZU3 236 aa13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 PLEKHO2Q8TD55 490 aa13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 AFAP1L1Q8TED9 768 aa13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 ACCSQ96QU6 501 aa13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 NIFKQ9BYG3 293 aaKnown RBP13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 DHX33Q9H6R0 707 aaKnown RBP13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 AJAP1Q9UKB5 411 aaPredicted RBP13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 REXO2Q9Y3B8 237 aaKnown RBP13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 ADGRG1Q9Y653 693 aa13.46□□□□□ -0.26
AP003559.1-201ENST00000540906 DENND3A2RUS2 1198 aa13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 ASB14A6NK59 587 aa13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 FAM155AB1AL88 458 aaPredicted RBP13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 ABL1P00519 1130 aa13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 EDN1P05305 212 aa13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 TPM1P09493 284 aa13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 TRIM49P0CI25 452 aa13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 TRIM49CP0CI26 452 aa13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 EPB41P11171 864 aaKnown RBP13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 SLC9A1P19634 815 aa13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 RPL13P26373 211 aaKnown RBP13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 ADSSP30520 456 aa13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 ADCYAP1R1P41586 468 aa13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 ZBED6P86452 979 aa13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 FIGNQ5HY92 759 aa13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 RGMBQ6NW40 437 aa13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 STXBP4Q6ZWJ1 553 aa13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 DHX37Q8IY37 1157 aaKnown RBP13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 RDH13Q8NBN7 331 aa13.45□□□□□ -0.26
AP003559.1-201ENST00000540906 OR8K1Q8NGG5 319 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms