RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 SEPT1Q8WYJ6 367 aa15.18■□□□□ 0.02
USP3-204ENST00000540797 HOMER3Q9NSC5 361 aa15.18■□□□□ 0.02
USP3-204ENST00000540797 ADAM22Q9P0K1 906 aa15.18■□□□□ 0.02
USP3-204ENST00000540797 MKRN1Q9UHC7 482 aaKnown RBP15.18■□□□□ 0.02
USP3-204ENST00000540797 DAAM1Q9Y4D1 1078 aa15.18■□□□□ 0.02
USP3-204ENST00000540797 PFASO15067 1338 aa15.18■□□□□ 0.02
USP3-204ENST00000540797 TSTA3Q13630 321 aaPredicted RBP15.18■□□□□ 0.02
USP3-204ENST00000540797 XKR3Q5GH77 459 aa15.18■□□□□ 0.02
USP3-204ENST00000540797 HINFPQ9BQA5 517 aa15.18■□□□□ 0.02
USP3-204ENST00000540797 SMARCAD1Q9H4L7 1026 aa15.18■□□□□ 0.02
USP3-204ENST00000540797 RABEP2Q9H5N1 569 aa15.18■□□□□ 0.02
USP3-204ENST00000540797 ECEL1O95672 775 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 PPP4CP60510 307 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 ANKRD20A3Q5VUR7 823 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 FMR1NBQ8N0W7 255 aaPredicted RBP15.17■□□□□ 0.02
USP3-204ENST00000540797 PANX2Q96RD6 677 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 KATNAL1Q9BW62 490 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 PRR29P0C7W0 189 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 PDE1BQ01064 536 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 NAALADL2Q58DX5 795 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 RWDD4Q6NW29 188 aaKnown RBP15.17■□□□□ 0.02
USP3-204ENST00000540797 PHF20Q9BVI0 1012 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 SUCLA2Q9P2R7 463 aaPredicted RBP15.17■□□□□ 0.02
USP3-204ENST00000540797 JRKLQ9Y4A0 524 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 ITSN1Q15811 1721 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 GSTA1P08263 222 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 GSTA2P09210 222 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 CHST13Q8NET6 341 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 PRMT6Q96LA8 375 aaPredicted RBP15.17■□□□□ 0.02
USP3-204ENST00000540797 ZWILCHQ9H900 591 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 RRAGDQ9NQL2 400 aaPredicted RBP15.17■□□□□ 0.02
USP3-204ENST00000540797 ADARB2Q9NS39 739 aaKnown RBP15.17■□□□□ 0.02
USP3-204ENST00000540797 CEP72Q9P209 647 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 AGO2Q9UKV8 859 aaKnown RBP15.17■□□□□ 0.02
USP3-204ENST00000540797 UBE2Q2LH0YL09 131 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 BNIP3LO60238 219 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 EFCAB13Q8IY85 973 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 GPD1LQ8N335 351 aa15.17■□□□□ 0.02
USP3-204ENST00000540797 RBAKQ9NYW8 714 aaPredicted RBP15.17■□□□□ 0.02
USP3-204ENST00000540797 TBXAS1P24557 533 aaPredicted RBP15.16■□□□□ 0.02
USP3-204ENST00000540797 EPHB1P54762 984 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 RHOT2Q8IXI1 618 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 ATG4CQ96DT6 458 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 PBKQ96KB5 322 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 FAM114A2Q9NRY5 505 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 TACC3Q9Y6A5 838 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 LGALS16A8MUM7 142 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 HEXIM1O94992 359 aaKnown RBP15.16■□□□□ 0.02
USP3-204ENST00000540797 CPP00450 1065 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 INHBAP08476 426 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 TROVE2P10155 538 aaKnown RBP eCLIP15.16■□□□□ 0.02
USP3-204ENST00000540797 BASP1P80723 227 aaKnown RBP15.16■□□□□ 0.02
USP3-204ENST00000540797 GINM1Q9NU53 330 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 MAGED2Q9UNF1 606 aaPredicted RBP15.16■□□□□ 0.02
USP3-204ENST00000540797 PDS5AQ29RF7 1337 aaKnown RBP15.16■□□□□ 0.02
USP3-204ENST00000540797 RNF40O75150 1001 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 HSPA6P17066 643 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 KYAT1Q16773 422 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 HSPH1Q92598 858 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 ZKSCAN4Q969J2 545 aaPredicted RBP15.16■□□□□ 0.02
USP3-204ENST00000540797 KIF12Q96FN5 646 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 FAM217BQ9NTX9 383 aaPredicted RBP15.16■□□□□ 0.02
USP3-204ENST00000540797 PIN4Q9Y237 131 aaKnown RBP15.16■□□□□ 0.02
USP3-204ENST00000540797 PRKCBP05771 671 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 SF3A3Q12874 501 aaKnown RBP eCLIP15.16■□□□□ 0.021e-7■■■■□ 19.8
USP3-204ENST00000540797 GUF1Q8N442 669 aaKnown RBP15.16■□□□□ 0.02
USP3-204ENST00000540797 MCUR1Q96AQ8 359 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 KIAA1210Q9ULL0 1709 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 KRT39Q6A163 491 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 PASD1Q8IV76 773 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 NUDT12Q9BQG2 462 aa15.16■□□□□ 0.02
USP3-204ENST00000540797 CACYBPQ9HB71 228 aaKnown RBP15.16■□□□□ 0.02
USP3-204ENST00000540797 POC1B-GALNT4F8VUJ3 575 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 DGAT1O75907 488 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 CXCR5P32302 372 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 CDC42EP1Q00587 391 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 ZNF449Q6P9G9 518 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 SPATA24Q86W54 205 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 JMJD4Q9H9V9 463 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 MFAP3LO75121 409 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 S100BP04271 92 aaPredicted RBP15.15■□□□□ 0.02
USP3-204ENST00000540797 GTF2A2P52657 109 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 TOGARAM2Q6ZUX3 1019 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 CABS1Q96KC9 395 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 TTC1Q99614 292 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 FNDC3AQ9Y2H6 1198 aaKnown RBP15.15■□□□□ 0.02
USP3-204ENST00000540797 NOC2LQ9Y3T9 749 aaKnown RBP15.15■□□□□ 0.02
USP3-204ENST00000540797 C1orf228Q6PIY5 440 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.15■□□□□ 0.022e-7■■■■□ 19.6
USP3-204ENST00000540797 AGBL1Q96MI9 1066 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 DPYSL4O14531 572 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 EPHX2P34913 555 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 RAPH1Q70E73 1250 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 RPUSD2Q8IZ73 545 aaKnown RBP15.15■□□□□ 0.02
USP3-204ENST00000540797 PPFIBP2Q8ND30 876 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 TIPINQ9BVW5 301 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 LMCD1Q9NZU5 365 aa15.15■□□□□ 0.02
USP3-204ENST00000540797 CNOT8Q9UFF9 292 aaKnown RBP15.15■□□□□ 0.02
USP3-204ENST00000540797 PPFIA4O75335 1185 aa15.14■□□□□ 0.01
USP3-204ENST00000540797 OAS2P29728 719 aaKnown RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms