RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 NEUROG2Q9H2A3 272 aa10.25□□□□□ -0.77
CTNNA1-243ENST00000540387 PCDH18Q9HCL0 1135 aa10.25□□□□□ -0.77
CTNNA1-243ENST00000540387 VPS54Q9P1Q0 977 aa10.25□□□□□ -0.77
CTNNA1-243ENST00000540387 CIDEBQ9UHD4 219 aa10.25□□□□□ -0.77
CTNNA1-243ENST00000540387 RWDD2AQ9UIY3 292 aa10.25□□□□□ -0.77
CTNNA1-243ENST00000540387 BARX2Q9UMQ3 279 aaPredicted RBP10.25□□□□□ -0.77
CTNNA1-243ENST00000540387 LRCH1Q9Y2L9 728 aa10.25□□□□□ -0.77
CTNNA1-243ENST00000540387 PRKAB2O43741 272 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 PLEKP08567 350 aaPredicted RBP10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 GM2AP17900 193 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 NAT1P18440 290 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 IARSP41252 1262 aaKnown RBP10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 RASSF7Q02833 373 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 RNASELQ05823 741 aaKnown RBP10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 SLC4A8Q2Y0W8 1093 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 KLHDC7AQ5VTJ3 777 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 RRAGBQ5VZM2 374 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 CCDC80Q76M96 950 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 SH3RF1Q7Z6J0 888 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 KLHL7Q8IXQ5 586 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 ARHGAP18Q8N392 663 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 ENDOVQ8N8Q3 282 aaKnown RBP10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 ZNF507Q8TCN5 953 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 ATP8B4Q8TF62 1192 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 FAM81BQ96LP2 452 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 CCDC42Q96M95 316 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 PRMT1Q99873 361 aaKnown RBP10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 SPATA16Q9BXB7 569 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 ADAM7Q9H2U9 754 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 RMND1Q9NWS8 449 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 SALL4Q9UJQ4 1053 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 CHMP2BQ9UQN3 213 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 CHD4Q14839 1912 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 CEP104O60308 925 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 CCNFP41002 786 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 PAK1Q13153 545 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 CUL1Q13616 776 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 CCDC92Q53HC0 331 aaPredicted RBP10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 STRIP1Q5VSL9 837 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 NCCRP1Q6ZVX7 275 aaPredicted RBP10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 MIGA2Q7L4E1 593 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 IRF2BP1Q8IU81 584 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 SLF2Q8IX21 1173 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 FERMT2Q96AC1 680 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 HIC2Q96JB3 615 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 HAPLN3Q96S86 360 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.24□□□□□ -0.773e-7■■□□□ 12.4
CTNNA1-243ENST00000540387 RIOK1Q9BRS2 568 aaKnown RBP10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 TTYH3Q9C0H2 523 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 CSRNP2Q9H175 543 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 NMRK1Q9NWW6 199 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 PDP2Q9P2J9 529 aa10.24□□□□□ -0.77
CTNNA1-243ENST00000540387 MAGEB6P1A0A0J9YX57 407 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 USP17L3A6NCW0 530 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 USP17L4A6NCW7 530 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 H0Y3Z8 333 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 SOCS7O14512 581 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 NVLO15381 856 aaKnown RBP10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 SUPT3HO75486 399 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 RAD17O75943 681 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 TJP3O95049 919 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 FGAP02671 866 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 CYP1A1P04798 512 aaPredicted RBP10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 CCNB1P14635 433 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 TRIM21P19474 475 aaKnown RBP10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 MMP13P45452 471 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 DNA2P51530 1060 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 PRELPP51888 382 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 PHEXP78562 749 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 DHX9Q08211 1270 aaKnown RBP10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 TMED1Q13445 227 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 PRPF4BQ13523 1007 aaKnown RBP10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 ZC2HC1CQ53FD0 456 aaPredicted RBP10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 DACT2Q5SW24 774 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 USP17L1Q7RTZ2 530 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 TMEM110Q86TL2 294 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 FITM2Q8N6M3 262 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 NELFBQ8WX92 580 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 IQCDQ96DY2 449 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 OXCT2Q9BYC2 517 aaPredicted RBP10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 CCDC134Q9H6E4 229 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 INTS9Q9NV88 658 aaKnown RBP10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 ETNK2Q9NVF9 386 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 HSFX1Q9UBD0 423 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 INTUQ9ULD6 942 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 MAGEA13PA6NCF6 341 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 SIGLEC16A6NMB1 481 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 F8VZ95 297 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 ATP9AO75110 1047 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 SUN1O94901 812 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 HNRNPCP07910 306 aaKnown RBP eCLIP10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 ALOX15P16050 662 aaPredicted RBP10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 IFNAR2P48551 515 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 PDE6CP51160 858 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 RNASE9P60153 205 aaKnown RBP10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 INF2Q27J81 1249 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 SH2D4BQ5SQS7 431 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 SDR42E1Q8WUS8 393 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 PHKBQ93100 1093 aa10.23□□□□□ -0.77
CTNNA1-243ENST00000540387 ARPC5LQ9BPX5 153 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms