RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 PHKBQ93100 1093 aa14.16□□□□□ -0.14
CLSTN3-208ENST00000538933 RRP36Q96EU6 259 aaKnown RBP14.16□□□□□ -0.14
CLSTN3-208ENST00000538933 TCF25Q9BQ70 676 aa14.16□□□□□ -0.14
CLSTN3-208ENST00000538933 CELF4Q9BZC1 486 aaKnown RBP14.16□□□□□ -0.14
CLSTN3-208ENST00000538933 FAM49AQ9H0Q0 323 aaPredicted RBP14.16□□□□□ -0.14
CLSTN3-208ENST00000538933 NGRNQ9NPE2 291 aaKnown RBP14.16□□□□□ -0.14
CLSTN3-208ENST00000538933 ERAP1Q9NZ08 941 aa14.16□□□□□ -0.14
CLSTN3-208ENST00000538933 LRFN2Q9ULH4 789 aa14.16□□□□□ -0.14
CLSTN3-208ENST00000538933 PCDHB7Q9Y5E2 793 aa14.16□□□□□ -0.14
CLSTN3-208ENST00000538933 TRPV2Q9Y5S1 764 aa14.16□□□□□ -0.14
CLSTN3-208ENST00000538933 HCFC2Q9Y5Z7 792 aa14.16□□□□□ -0.14
CLSTN3-208ENST00000538933 KDM3AQ9Y4C1 1321 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 EVPLQ92817 2033 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 CACNA1IQ9P0X4 2223 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 TBKBP1A7MCY6 615 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 JAK2O60674 1132 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 RPLP2P05387 115 aaKnown RBP14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 WEE2P0C1S8 567 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 MARK3P27448 753 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 SMARCA1P28370 1054 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 GJB2P29033 226 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 TMEM62Q0P6H9 643 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 ST3GAL1Q11201 340 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 PAK2Q13177 524 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 TMEM266Q2M3C6 531 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 TPRNQ4KMQ1 711 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 SPOUT1Q5T280 376 aaKnown RBP14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 CES5AQ6NT32 575 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 LRRC55Q6ZSA7 311 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 SRBD1Q8N5C6 995 aaKnown RBP14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 CASP10Q92851 521 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 SPZ1Q9BXG8 430 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 RNF26Q9BY78 433 aaPredicted RBP14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 RGS18Q9NS28 235 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 FAM217BQ9NTX9 383 aaPredicted RBP14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 USTQ9Y2C2 406 aa14.15□□□□□ -0.14
CLSTN3-208ENST00000538933 CNTNAP5Q8WYK1 1306 aa14.15□□□□□ -0.15
CLSTN3-208ENST00000538933 C9IYK1 514 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 DEXIO95424 95 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 INSRRP14616 1297 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 KCNA2P16389 499 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 XBP1P17861 261 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 MTHFRP42898 656 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 FAM189BP81408 668 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 TRIM29Q14134 588 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 KANK3Q6NY19 840 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 MRPL43Q8N983 215 aaKnown RBP14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 FEZF2Q8TBJ5 459 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 SEPT1Q8WYJ6 367 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 PCYT2Q99447 389 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 RTP3Q9BQQ7 232 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 RIOX1Q9H6W3 641 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 ERVK-5Q9HDB9 667 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 PCDHA2Q9Y5H9 948 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 R4GN57 208 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 V9GY48 417 aaPredicted RBP14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 STK36Q9NRP7 1315 aa14.14□□□□□ -0.15
CLSTN3-208ENST00000538933 C2orf71A6NGG8 1288 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 RRN3P2A6NIE6 340 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 H3BQV1 296 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 PRPF3O43395 683 aaKnown RBP14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 DTNBO60941 627 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 CLASP2O75122 1294 aaKnown RBP14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 CTDNEP1O95476 244 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 PDCP20941 246 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 FOSBP53539 338 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 IGBP1P78318 339 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 NTRK3Q16288 839 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 PCNX4Q63HM2 1172 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 FAM43BQ6ZT52 329 aaPredicted RBP14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 SLC24A5Q71RS6 500 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 PLCD3Q8N3E9 789 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 C12orf76Q8N812 135 aaPredicted RBP14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 GIMAP8Q8ND71 665 aaPredicted RBP14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 SMARCC2Q8TAQ2 1214 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 KCNG4Q8TDN1 519 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 PIGSQ96S52 555 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 SMARCAD1Q9H4L7 1026 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 CDHR5Q9HBB8 845 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 ENTPD7Q9NQZ7 604 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 PUF60Q9UHX1 559 aaKnown RBP14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 ATRXP46100 2492 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 C2orf16Q68DN1 1984 aa14.13□□□□□ -0.15
CLSTN3-208ENST00000538933 ZZEF1O43149 2961 aa14.12□□□□□ -0.15
CLSTN3-208ENST00000538933 hCG_1642624A0A1W2PR95 340 aa14.12□□□□□ -0.15
CLSTN3-208ENST00000538933 CYTH3O43739 400 aa14.12□□□□□ -0.15
CLSTN3-208ENST00000538933 EOMESO95936 686 aa14.12□□□□□ -0.15
CLSTN3-208ENST00000538933 FGFR1P11362 822 aa14.12□□□□□ -0.15
CLSTN3-208ENST00000538933 LAG3P18627 525 aa14.12□□□□□ -0.15
CLSTN3-208ENST00000538933 KIAA1841Q6NSI8 718 aa14.12□□□□□ -0.15
CLSTN3-208ENST00000538933 XRRA1Q6P2D8 792 aa14.12□□□□□ -0.15
CLSTN3-208ENST00000538933 DCLK2Q8N568 766 aa14.12□□□□□ -0.15
CLSTN3-208ENST00000538933 TDRD5Q8NAT2 981 aaKnown RBP14.12□□□□□ -0.15
CLSTN3-208ENST00000538933 CYP2W1Q8TAV3 490 aa14.12□□□□□ -0.15
CLSTN3-208ENST00000538933 TRAPPC12Q8WVT3 735 aa14.12□□□□□ -0.15
CLSTN3-208ENST00000538933 ADAM2Q99965 735 aa14.12□□□□□ -0.15
CLSTN3-208ENST00000538933 RNF19AQ9NV58 838 aa14.12□□□□□ -0.15
CLSTN3-208ENST00000538933 NOC2LQ9Y3T9 749 aaKnown RBP14.12□□□□□ -0.15
CLSTN3-208ENST00000538933 PNMA6FA0A0J9YX94 578 aa14.11□□□□□ -0.15
CLSTN3-208ENST00000538933 IBSPP21815 317 aaPredicted RBP14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms