RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 E2F5Q15329 346 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 UBE3CQ15386 1083 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 PPP1R7Q15435 360 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 CCDC152Q4G0S7 254 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 ZC3H12AQ5D1E8 599 aaKnown RBP7.31□□□□□ -1.24
USP28-207ENST00000538475 C1orf141Q5JVX7 400 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 EPHA10Q5JZY3 1008 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 SPDYAQ5MJ70 313 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 FKBP15Q5T1M5 1219 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 TTC19Q6DKK2 380 aaPredicted RBP7.31□□□□□ -1.24
USP28-207ENST00000538475 KLHL10Q6JEL2 608 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 KRT25Q7Z3Z0 450 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 ALYREFQ86V81 257 aaKnown RBP7.31□□□□□ -1.24
USP28-207ENST00000538475 ARHGAP18Q8N392 663 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 KLHL23Q8NBE8 558 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 MIPOL1Q8TD10 442 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 IGDCC4Q8TDY8 1250 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 SEC14L1Q92503 715 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 RAPGEF5Q92565 580 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 COL26A1Q96A83 441 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 TLCD1Q96CP7 247 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 PGM2Q96G03 612 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 TRAPPC9Q96Q05 1148 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 RAB3IPQ96QF0 476 aaPredicted RBP7.31□□□□□ -1.24
USP28-207ENST00000538475 XPO6Q96QU8 1125 aaKnown RBP7.31□□□□□ -1.24
USP28-207ENST00000538475 TSC22D3Q99576 134 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 TMEM109Q9BVC6 243 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 LACRTQ9GZZ8 138 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 VCXQ9H320 206 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 SUV39H2Q9H5I1 410 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 SLITRK6Q9H5Y7 841 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 PPANQ9NQ55 473 aaKnown RBP7.31□□□□□ -1.24
USP28-207ENST00000538475 CHCHD3Q9NX63 227 aaKnown RBP7.31□□□□□ -1.24
USP28-207ENST00000538475 TAB2Q9NYJ8 693 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 SAMD15Q9P1V8 674 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 BAIAP2L1Q9UHR4 511 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 TMEM59LQ9UK28 342 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 SLC12A7Q9Y666 1083 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.31□□□□□ -1.24
USP28-207ENST00000538475 ROBO2Q9HCK4 1378 aa7.31□□□□□ -1.24
USP28-207ENST00000538475 ADAMTS13Q76LX8 1427 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 BTBD18B2RXH4 712 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 M0R082 166 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 M0R2C6 588 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 EYA2O00167 538 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 COQ9O75208 318 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 RHOBTB3O94955 611 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 LMNAP02545 664 aaKnown RBP7.3□□□□□ -1.24
USP28-207ENST00000538475 TFRCP02786 760 aaKnown RBP7.3□□□□□ -1.24
USP28-207ENST00000538475 RPN1P04843 607 aaKnown RBP7.3□□□□□ -1.24
USP28-207ENST00000538475 IMPDH2P12268 514 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 NQO1P15559 274 aaKnown RBP7.3□□□□□ -1.24
USP28-207ENST00000538475 TRIM21P19474 475 aaKnown RBP7.3□□□□□ -1.24
USP28-207ENST00000538475 MAGEA1P43355 309 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 CASP7P55210 303 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 STX17P56962 302 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 ATP2C1P98194 919 aaPredicted RBP7.3□□□□□ -1.24
USP28-207ENST00000538475 ATP11AP98196 1134 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 CCDC15Q0P6D6 951 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 MYO1EQ12965 1108 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 ZNF827Q17R98 1081 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 CCDC96Q2M329 555 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 HSP90AA4PQ58FG1 418 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 BTNL9Q6UXG8 535 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 TRPM8Q7Z2W7 1104 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 IRF2BP1Q8IU81 584 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 RBM12BQ8IXT5 1001 aaKnown RBP7.3□□□□□ -1.24
USP28-207ENST00000538475 GSPT2Q8IYD1 628 aaKnown RBP7.3□□□□□ -1.24
USP28-207ENST00000538475 RGL4Q8IZJ4 473 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 CMTR1Q8N1G2 835 aaKnown RBP7.3□□□□□ -1.24
USP28-207ENST00000538475 CRACR2BQ8N4Y2 399 aaPredicted RBP7.3□□□□□ -1.24
USP28-207ENST00000538475 SH2D3CQ8N5H7 860 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 ZNF417Q8TAU3 575 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 ACTRT1Q8TDG2 376 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 OSBP2Q969R2 916 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 ZNF317Q96PQ6 595 aaPredicted RBP7.3□□□□□ -1.24
USP28-207ENST00000538475 ZNF587Q96SQ5 575 aaPredicted RBP7.3□□□□□ -1.24
USP28-207ENST00000538475 TLR10Q9BXR5 811 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 TRIM7Q9C029 511 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 FAM192AQ9GZU8 254 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 SAP130Q9H0E3 1048 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 RAB17Q9H0T7 212 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 LY9Q9HBG7 655 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 EPB41L5Q9HCM4 733 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 INCENPQ9NQS7 918 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 PAPOLBQ9NRJ5 636 aaKnown RBP7.3□□□□□ -1.24
USP28-207ENST00000538475 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.3□□□□□ -1.24
USP28-207ENST00000538475 TRIM10Q9UDY6 481 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 CNOT7Q9UIV1 285 aaKnown RBP7.3□□□□□ -1.24
USP28-207ENST00000538475 NFU1Q9UMS0 254 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 DIS3Q9Y2L1 958 aaKnown RBP7.3□□□□□ -1.24
USP28-207ENST00000538475 PCDHGC5Q9Y5F6 944 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 RTL9Q8NET4 1388 aa7.3□□□□□ -1.24
USP28-207ENST00000538475 WNK3Q9BYP7 1800 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 BCL9O00512 1426 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 GPR75-ASB3A0A0A6YYF3 556 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 CCDC169A6NNP5 214 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 LAD1O00515 517 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 ZNF185O15231 689 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 PPFIA2O75334 1257 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms