RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 MYH7P12883 1935 aa10.56□□□□□ -0.72
USP28-205ENST00000537706 RPS9P46781 194 aaKnown RBP10.56□□□□□ -0.72
USP28-205ENST00000537706 BCAR1P56945 870 aa10.56□□□□□ -0.72
USP28-205ENST00000537706 SLC44A4Q53GD3 710 aa10.56□□□□□ -0.72
USP28-205ENST00000537706 LRRC55Q6ZSA7 311 aa10.56□□□□□ -0.72
USP28-205ENST00000537706 AUTS2Q8WXX7 1259 aa10.56□□□□□ -0.72
USP28-205ENST00000537706 SMG7Q92540 1137 aaKnown RBP10.56□□□□□ -0.72
USP28-205ENST00000537706 MYADMQ96S97 322 aa10.56□□□□□ -0.72
USP28-205ENST00000537706 IER2Q9BTL4 223 aa10.56□□□□□ -0.72
USP28-205ENST00000537706 DDX23Q9BUQ8 820 aaKnown RBP10.56□□□□□ -0.72
USP28-205ENST00000537706 CPVLQ9H3G5 476 aa10.56□□□□□ -0.72
USP28-205ENST00000537706 BCAS3Q9H6U6 928 aa10.56□□□□□ -0.72
USP28-205ENST00000537706 NOC2LQ9Y3T9 749 aaKnown RBP10.56□□□□□ -0.72
USP28-205ENST00000537706 CCDC195A0A1B0GUA6 201 aa10.55□□□□□ -0.72
USP28-205ENST00000537706 GDF9O60383 454 aa10.55□□□□□ -0.72
USP28-205ENST00000537706 N4BP1O75113 896 aaKnown RBP10.55□□□□□ -0.72
USP28-205ENST00000537706 KCNK5O95279 499 aa10.55□□□□□ -0.72
USP28-205ENST00000537706 ZIC2O95409 532 aaPredicted RBP10.55□□□□□ -0.72
USP28-205ENST00000537706 PARP1P09874 1014 aaKnown RBP10.55□□□□□ -0.72
USP28-205ENST00000537706 TSSK4Q6SA08 328 aa10.55□□□□□ -0.72
USP28-205ENST00000537706 RNF169Q8NCN4 708 aa10.55□□□□□ -0.72
USP28-205ENST00000537706 ADAM33Q9BZ11 813 aa10.55□□□□□ -0.72
USP28-205ENST00000537706 KAT14Q9H8E8 782 aa10.55□□□□□ -0.72
USP28-205ENST00000537706 RTEL1Q9NZ71 1219 aa10.55□□□□□ -0.72
USP28-205ENST00000537706 SSX2IPQ9Y2D8 614 aa10.55□□□□□ -0.72
USP28-205ENST00000537706 NUMBLQ9Y6R0 609 aa10.55□□□□□ -0.72
USP28-205ENST00000537706 DMXL1Q9Y485 3027 aa10.55□□□□□ -0.72
USP28-205ENST00000537706 ANHXE9PGG2 379 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 INPPL1O15357 1258 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 FGRP09769 529 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 LAMP2P13473 410 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 CNR2P34972 360 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 CLCN4P51793 760 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 HTR4Q13639 388 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 MTSS1LQ765P7 747 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 GET4Q7L5D6 327 aaPredicted RBP10.54□□□□□ -0.72
USP28-205ENST00000537706 MAN1C1Q9NR34 630 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 DENND4AQ7Z401 1863 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 NT5C1B-RDH14C9J2C7 533 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 PCP11498 1178 aaKnown RBP10.54□□□□□ -0.72
USP28-205ENST00000537706 GPC5P78333 572 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 FOXC1Q12948 553 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 ZNF852Q6ZMS4 543 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 DGKHQ86XP1 1220 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 CLDN23Q96B33 292 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 LRRCC1Q9C099 1032 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 JMJD4Q9H9V9 463 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 GPR179Q6PRD1 2367 aa10.54□□□□□ -0.72
USP28-205ENST00000537706 CCR3P51677 355 aa10.53□□□□□ -0.72
USP28-205ENST00000537706 PNMA1Q8ND90 353 aa10.53□□□□□ -0.72
USP28-205ENST00000537706 MRPL17Q9NRX2 175 aaKnown RBP10.53□□□□□ -0.72
USP28-205ENST00000537706 IGSF5Q9NSI5 407 aa10.53□□□□□ -0.72
USP28-205ENST00000537706 FAM217BQ9NTX9 383 aaPredicted RBP10.53□□□□□ -0.72
USP28-205ENST00000537706 FNDC1Q4ZHG4 1894 aaPredicted RBP10.53□□□□□ -0.72
USP28-205ENST00000537706 FASNP49327 2511 aaKnown RBP10.53□□□□□ -0.72
USP28-205ENST00000537706 ZC3H11AO75152 810 aaKnown RBP eCLIP10.52□□□□□ -0.727e-6■■■■■ 33.7
USP28-205ENST00000537706 ADH1AP07327 375 aa10.52□□□□□ -0.72
USP28-205ENST00000537706 NT5C2P49902 561 aa10.52□□□□□ -0.72
USP28-205ENST00000537706 CRYBB1P53674 252 aaPredicted RBP10.52□□□□□ -0.72
USP28-205ENST00000537706 SEMA3FQ13275 785 aa10.52□□□□□ -0.72
USP28-205ENST00000537706 MTHFD1LQ6UB35 978 aa10.52□□□□□ -0.72
USP28-205ENST00000537706 MFSD6Q6ZSS7 791 aa10.52□□□□□ -0.72
USP28-205ENST00000537706 CEP68Q76N32 757 aa10.52□□□□□ -0.72
USP28-205ENST00000537706 ECHDC2Q86YB7 292 aa10.52□□□□□ -0.72
USP28-205ENST00000537706 ESR2Q92731 530 aa10.52□□□□□ -0.72
USP28-205ENST00000537706 CUL5Q93034 780 aa10.52□□□□□ -0.72
USP28-205ENST00000537706 IGSF21Q96ID5 467 aa10.52□□□□□ -0.72
USP28-205ENST00000537706 SEC62Q99442 399 aaKnown RBP10.52□□□□□ -0.72
USP28-205ENST00000537706 RNF41Q9H4P4 317 aaPredicted RBP10.52□□□□□ -0.72
USP28-205ENST00000537706 MTF2Q9Y483 593 aaPredicted RBP10.52□□□□□ -0.72
USP28-205ENST00000537706 OPLAHO14841 1288 aa10.52□□□□□ -0.73
USP28-205ENST00000537706 ZBTB5O15062 677 aa10.52□□□□□ -0.73
USP28-205ENST00000537706 GLUD1P00367 558 aa10.52□□□□□ -0.73
USP28-205ENST00000537706 MRPS9P82933 396 aaKnown RBP10.52□□□□□ -0.73
USP28-205ENST00000537706 ZMYM1Q5SVZ6 1142 aa10.52□□□□□ -0.73
USP28-205ENST00000537706 STPG1Q5TH74 334 aa10.52□□□□□ -0.73
USP28-205ENST00000537706 PSAPL1Q6NUJ1 521 aa10.52□□□□□ -0.73
USP28-205ENST00000537706 IQCA1Q86XH1 822 aa10.52□□□□□ -0.73
USP28-205ENST00000537706 HELQQ8TDG4 1101 aa10.52□□□□□ -0.73
USP28-205ENST00000537706 HDAC7Q8WUI4 952 aa10.52□□□□□ -0.73
USP28-205ENST00000537706 GPRASP2Q96D09 838 aa10.52□□□□□ -0.73
USP28-205ENST00000537706 ZBTB10Q96DT7 871 aa10.52□□□□□ -0.73
USP28-205ENST00000537706 LSM14BQ9BX40 385 aaKnown RBP10.52□□□□□ -0.73
USP28-205ENST00000537706 RXFP3Q9NSD7 469 aa10.52□□□□□ -0.73
USP28-205ENST00000537706 RNF19AQ9NV58 838 aa10.52□□□□□ -0.73
USP28-205ENST00000537706 DNAH14Q0VDD8 3507 aa10.52□□□□□ -0.73
USP28-205ENST00000537706 DMDP11532 3685 aa10.51□□□□□ -0.73
USP28-205ENST00000537706 GSTTP1A0A1W2PQM5 241 aa10.51□□□□□ -0.73
USP28-205ENST00000537706 NOVA1P51513 510 aaKnown RBP10.51□□□□□ -0.73
USP28-205ENST00000537706 ADCY1Q08828 1119 aa10.51□□□□□ -0.73
USP28-205ENST00000537706 DSC3Q14574 896 aa10.51□□□□□ -0.73
USP28-205ENST00000537706 PLCB4Q15147 1175 aa10.51□□□□□ -0.73
USP28-205ENST00000537706 TPRG1Q6ZUI0 275 aa10.51□□□□□ -0.73
USP28-205ENST00000537706 KAT6AQ92794 2004 aa10.51□□□□□ -0.73
USP28-205ENST00000537706 CFAP47Q6ZTR5 3102 aa10.51□□□□□ -0.73
USP28-205ENST00000537706 TM4SF5O14894 197 aa10.5□□□□□ -0.73
USP28-205ENST00000537706 URODP06132 367 aa10.5□□□□□ -0.73
USP28-205ENST00000537706 CNPP09543 421 aaKnown RBP10.5□□□□□ -0.73
USP28-205ENST00000537706 TARSP26639 723 aaKnown RBP10.5□□□□□ -0.73
USP28-205ENST00000537706 RNASELQ05823 741 aaKnown RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms