RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 RAD51CO43502 376 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 METAP2P50579 478 aaKnown RBP eCLIP11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 DHX9Q08211 1270 aaKnown RBP11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 GSTA3Q16772 222 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 EDC3Q96F86 508 aaKnown RBP11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 NR1H4Q96RI1 486 aaPredicted RBP11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 SMC6Q96SB8 1091 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 PYM1Q9BRP8 204 aaKnown RBP11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 SPATA16Q9BXB7 569 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 F8VZ95 297 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 IDO1P14902 403 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 TMEM259Q4ZIN3 620 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 MFSD6Q6ZSS7 791 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 NCOA7Q8NI08 942 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 SH3TC2Q8TF17 1288 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 RSPH1Q8WYR4 309 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 MS4A14Q96JA4 679 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 NACA2Q9H009 215 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 EXOC1Q9NV70 894 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 TJP3O95049 919 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 BCRP11274 1271 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 SCNN1DP51172 638 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 CDK17Q00537 523 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 LDHDQ86WU2 507 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 CFAP61Q8NHU2 1237 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 BRD8Q9H0E9 1235 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 NKX1-2Q9UD57 310 aaPredicted RBP11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 H0YGN5 161 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 GALNTL6Q49A17 601 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 WDR59Q6PJI9 974 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 KBTBD3Q8NAB2 608 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 SLC17A8Q8NDX2 589 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 AGBL3Q8NEM8 1001 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 SPATA20Q8TB22 786 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 UCMAQ8WVF2 138 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 FERMT2Q96AC1 680 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 OCEL1Q9H607 264 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 RPL26L1Q9UNX3 145 aaKnown RBP11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 NFS1Q9Y697 457 aa11.72□□□□□ -0.53
CLSTN3-207ENST00000537408 SERPINB3P29508 390 aa11.71□□□□□ -0.53
CLSTN3-207ENST00000537408 LSAMPQ13449 338 aa11.71□□□□□ -0.53
CLSTN3-207ENST00000537408 DIXDC1Q155Q3 683 aa11.71□□□□□ -0.53
CLSTN3-207ENST00000537408 DENND2CQ68D51 928 aa11.71□□□□□ -0.53
CLSTN3-207ENST00000537408 NANOGNBQ7Z5D8 188 aa11.71□□□□□ -0.53
CLSTN3-207ENST00000537408 NOSTRINQ8IVI9 506 aa11.71□□□□□ -0.53
CLSTN3-207ENST00000537408 CCDC82Q8N4S0 544 aa11.71□□□□□ -0.53
CLSTN3-207ENST00000537408 PHC3Q8NDX5 983 aa11.71□□□□□ -0.53
CLSTN3-207ENST00000537408 SNRNP27Q8WVK2 155 aaKnown RBP11.71□□□□□ -0.53
CLSTN3-207ENST00000537408 STMN2Q93045 179 aa11.71□□□□□ -0.53
CLSTN3-207ENST00000537408 PAGE5Q96GU1 130 aa11.71□□□□□ -0.53
CLSTN3-207ENST00000537408 LRRC37A3O60309 1634 aa11.71□□□□□ -0.53
CLSTN3-207ENST00000537408 CYLC2Q14093 348 aaPredicted RBP11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 STRIP1Q5VSL9 837 aa11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 PHLDB3Q6NSJ2 640 aa11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 TYW1BQ6NUM6 668 aa11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 USP50Q70EL3 339 aaPredicted RBP11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 ABHD8Q96I13 439 aa11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 TRIM47Q96LD4 638 aa11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 ARPC5LQ9BPX5 153 aa11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 SIKE1Q9BRV8 207 aa11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 MTA3Q9BTC8 594 aa11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 CD209Q9NNX6 404 aa11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 TLR7Q9NYK1 1049 aaKnown RBP11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 FBXO2Q9UK22 296 aaPredicted RBP11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 R3HDM2Q9Y2K5 976 aaKnown RBP11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 SRPRBQ9Y5M8 271 aaKnown RBP11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 GFPT2O94808 682 aa11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 ZAP70P43403 619 aa11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 HUNKP57058 714 aa11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 ENDOVQ8N8Q3 282 aaKnown RBP11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 TLCD1Q96CP7 247 aa11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 ZNF333Q96JL9 665 aa11.71□□□□□ -0.54
CLSTN3-207ENST00000537408 MAGEB6P1A0A0J9YX57 407 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 PEX11AO75192 247 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 CELF2O95319 508 aaKnown RBP11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 NAT1P18440 290 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 LRRC43Q8N309 656 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 FBXL16Q8N461 479 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 IFT43Q96FT9 208 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 TRAIPQ9BWF2 469 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 NMRK1Q9NWW6 199 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 UTP11Q9Y3A2 253 aaKnown RBP11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 ZNF711Q9Y462 761 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 SLC12A7Q9Y666 1083 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 CLRN2A0PK11 232 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 UNC5CO95185 931 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 AGTP01019 485 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 ITGA2BP08514 1039 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 CA8P35219 290 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 KIF11P52732 1056 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 ADARP55265 1226 aaKnown RBP11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 SULT2A1Q06520 285 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 TMEM67Q5HYA8 995 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 C6orf118Q5T5N4 469 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 HS2ST1Q7LGA3 356 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 ERMNQ8TAM6 284 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 FAM163AQ96GL9 167 aaPredicted RBP11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 CCDC134Q9H6E4 229 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 ATP8A2Q9NTI2 1148 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms