RNA–Protein interactions for RNA: ENST00000534885.5

TNFRSF1A-205, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best)

Gene TNFRSF1A, Length 2,069 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-205ENST00000534885 TGFB1I1O43294 461 aa22.39■■□□□ 1.17
TNFRSF1A-205ENST00000534885 MAPTP10636 758 aaKnown RBP22.39■■□□□ 1.17
TNFRSF1A-205ENST00000534885 EDRF1Q3B7T1 1238 aa22.39■■□□□ 1.17
TNFRSF1A-205ENST00000534885 STXBP4Q6ZWJ1 553 aa22.39■■□□□ 1.17
TNFRSF1A-205ENST00000534885 KIFC3Q9BVG8 833 aa22.39■■□□□ 1.17
TNFRSF1A-205ENST00000534885 TYW1Q9NV66 732 aaKnown RBP22.39■■□□□ 1.17
TNFRSF1A-205ENST00000534885 UBE4BO95155 1302 aa22.39■■□□□ 1.17
TNFRSF1A-205ENST00000534885 N4BP3O15049 544 aa22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 LGALS2P05162 132 aa22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 NPTX2P47972 431 aa22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 NCKAP1LP55160 1127 aa22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 DMP1Q13316 513 aaPredicted RBP22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 HS1BP3Q53T59 392 aa22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 HAUS6Q7Z4H7 955 aa22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 SLC7A3Q8WY07 619 aa22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 LENG1Q96BZ8 264 aaPredicted RBP22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 ZNF830Q96NB3 372 aaPredicted RBP22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 TUBGCP2Q9BSJ2 902 aa22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 POLR3FQ9H1D9 316 aaPredicted RBP22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 ZBTB42B2RXF5 422 aa22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 FGFR1OPO95684 399 aaKnown RBP22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 ZNF286BP0CG31 522 aa22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 NR2F2P24468 414 aa22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 VEGFBP49765 207 aa22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 SLC26A2P50443 739 aa22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 FILIP1LQ4L180 1135 aa22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 ZC3H3Q8IXZ2 948 aaKnown RBP22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 OR6J1Q8NGC5 347 aa22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 TMEM143Q96AN5 459 aa22.38■■□□□ 1.17
TNFRSF1A-205ENST00000534885 CCDC169A6NNP5 214 aa22.37■■□□□ 1.17
TNFRSF1A-205ENST00000534885 TRPA1O75762 1119 aa22.37■■□□□ 1.17
TNFRSF1A-205ENST00000534885 ADAM9Q13443 819 aa22.37■■□□□ 1.17
TNFRSF1A-205ENST00000534885 RNPEPQ9H4A4 650 aa22.37■■□□□ 1.17
TNFRSF1A-205ENST00000534885 HTTP42858 3142 aa22.37■■□□□ 1.17
TNFRSF1A-205ENST00000534885 CLIC2O15247 247 aa22.37■■□□□ 1.17
TNFRSF1A-205ENST00000534885 RFC5P40937 340 aa22.37■■□□□ 1.17
TNFRSF1A-205ENST00000534885 MTIF2P46199 727 aaKnown RBP22.37■■□□□ 1.17
TNFRSF1A-205ENST00000534885 FLT3LGP49771 235 aa22.37■■□□□ 1.17
TNFRSF1A-205ENST00000534885 IRF5Q13568 498 aa22.37■■□□□ 1.17
TNFRSF1A-205ENST00000534885 ARID5BQ14865 1188 aa22.37■■□□□ 1.17
TNFRSF1A-205ENST00000534885 ST6GALNAC4Q9H4F1 302 aa22.37■■□□□ 1.17
TNFRSF1A-205ENST00000534885 C17orf75Q9HAS0 396 aa22.37■■□□□ 1.17
TNFRSF1A-205ENST00000534885 ERAP1Q9NZ08 941 aa22.37■■□□□ 1.17
TNFRSF1A-205ENST00000534885 TRPC6Q9Y210 931 aa22.37■■□□□ 1.17
TNFRSF1A-205ENST00000534885 GNEQ9Y223 722 aaKnown RBP22.37■■□□□ 1.17
TNFRSF1A-205ENST00000534885 ADGRA3Q8IWK6 1321 aa22.36■■□□□ 1.17
TNFRSF1A-205ENST00000534885 CALUO43852 315 aaPredicted RBP22.36■■□□□ 1.17
TNFRSF1A-205ENST00000534885 MMP3P08254 477 aa22.36■■□□□ 1.17
TNFRSF1A-205ENST00000534885 GTF2BQ00403 316 aa22.36■■□□□ 1.17
TNFRSF1A-205ENST00000534885 SP3Q02447 781 aa22.36■■□□□ 1.17
TNFRSF1A-205ENST00000534885 TMEM161BQ8NDZ6 487 aa22.36■■□□□ 1.17
TNFRSF1A-205ENST00000534885 TRAPPC12Q8WVT3 735 aa22.36■■□□□ 1.17
TNFRSF1A-205ENST00000534885 CEP63Q96MT8 703 aa22.36■■□□□ 1.17
TNFRSF1A-205ENST00000534885 C16orf70Q9BSU1 422 aa22.36■■□□□ 1.17
TNFRSF1A-205ENST00000534885 PPFIA4O75335 1185 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 MAFO75444 373 aaPredicted RBP22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 PBX1P40424 430 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 SMTNP53814 917 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 RTP1P59025 263 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 PRKCZQ05513 592 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 TBC1D8BQ0IIM8 1120 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 ALCAMQ13740 583 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 NTPCRQ9BSD7 190 aaKnown RBP22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 GBP3Q9H0R5 595 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 KMT5AQ9NQR1 393 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 RNF186Q9NXI6 227 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 IMPACTQ9P2X3 320 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 LGALS16A8MUM7 142 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 PES1O00541 588 aaKnown RBP22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 DYNC1LI2O43237 492 aaPredicted RBP22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 NR3C1P04150 777 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 XRCC5P13010 732 aaKnown RBP22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 DRP2Q13474 957 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 MIIPQ5JXC2 388 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 SPECC1LQ69YQ0 1117 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 SPIRE2Q8WWL2 714 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 TRIB2Q92519 343 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 KCNF1Q9H3M0 494 aa22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.35■■□□□ 1.17
TNFRSF1A-205ENST00000534885 CETN3O15182 167 aa22.34■■□□□ 1.17
TNFRSF1A-205ENST00000534885 HOXD8P13378 290 aaPredicted RBP22.34■■□□□ 1.17
TNFRSF1A-205ENST00000534885 MAP2K2P36507 400 aa22.34■■□□□ 1.17
TNFRSF1A-205ENST00000534885 IRX5P78411 483 aaPredicted RBP22.34■■□□□ 1.17
TNFRSF1A-205ENST00000534885 SYCP3Q8IZU3 236 aa22.34■■□□□ 1.17
TNFRSF1A-205ENST00000534885 ASAP3Q8TDY4 903 aa22.34■■□□□ 1.17
TNFRSF1A-205ENST00000534885 NOC4LQ9BVI4 516 aaKnown RBP22.34■■□□□ 1.17
TNFRSF1A-205ENST00000534885 AGPAT3Q9NRZ7 376 aa22.34■■□□□ 1.17
TNFRSF1A-205ENST00000534885 HBP1O60381 514 aa22.34■■□□□ 1.17
TNFRSF1A-205ENST00000534885 ARL2P36404 184 aa22.34■■□□□ 1.17
TNFRSF1A-205ENST00000534885 UBXN1Q04323 297 aa22.34■■□□□ 1.17
TNFRSF1A-205ENST00000534885 TLK2Q86UE8 772 aa22.34■■□□□ 1.17
TNFRSF1A-205ENST00000534885 SLC17A8Q8NDX2 589 aa22.34■■□□□ 1.17
TNFRSF1A-205ENST00000534885 IFT74Q96LB3 600 aa22.34■■□□□ 1.17
TNFRSF1A-205ENST00000534885 CFHR5Q9BXR6 569 aa22.34■■□□□ 1.17
TNFRSF1A-205ENST00000534885 DENND3A2RUS2 1198 aa22.33■■□□□ 1.17
TNFRSF1A-205ENST00000534885 TISP43B9A030 160 aa22.33■■□□□ 1.17
TNFRSF1A-205ENST00000534885 GLRA2P23416 452 aa22.33■■□□□ 1.17
TNFRSF1A-205ENST00000534885 CCDC40Q4G0X9 1142 aa22.33■■□□□ 1.17
TNFRSF1A-205ENST00000534885 HS2ST1Q7LGA3 356 aa22.33■■□□□ 1.17
TNFRSF1A-205ENST00000534885 CACTINQ8WUQ7 758 aaKnown RBP22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms