RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	FAM89A	Q96GI7	184 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	DYDC2	Q96IM9	177 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	HIST1H2AH	Q96KK5	128 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	WDR92	Q96MX6	357 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	GPR101	Q96P66	508 aa	Predicted RBP	3.96	□□□□□ -1.78
CD44-238	ENST00000534296	HIST1H2AJ	Q99878	128 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	NELFA	Q9H3P2	528 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	ZFR2	Q9UPR6	939 aa	Known RBP	3.96	□□□□□ -1.78
CD44-238	ENST00000534296	PTPN22	Q9Y2R2	807 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	ZNF891	A8MT65	544 aa	Predicted RBP	3.95	□□□□□ -1.78
CD44-238	ENST00000534296	PATE3	B3GLJ2	98 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	DVL2	O14641	736 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	MUSK	O15146	869 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	GPR42	O15529	346 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	NRP2	O60462	931 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	ZNF623	O75123	536 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	RAD17	O75943	681 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	ZNF20	P17024	532 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	XPA	P23025	273 aa	Predicted RBP	3.95	□□□□□ -1.78
CD44-238	ENST00000534296	PTX3	P26022	381 aa	Predicted RBP	3.95	□□□□□ -1.78
CD44-238	ENST00000534296	KRT40	Q6A162	431 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	SDE2	Q6IQ49	451 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	KIAA1841	Q6NSI8	718 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	NXPE1	Q8N323	547 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	SMC1B	Q8NDV3	1235 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	OR14K1	Q8NGZ2	314 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	CHTF18	Q8WVB6	975 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	GNRHR2	Q96P88	292 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	OR14A2	Q96R54	314 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	DPYSL5	Q9BPU6	564 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	C1QTNF3	Q9BXJ4	246 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	KLC2	Q9H0B6	622 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	ST6GALNAC2	Q9UJ37	374 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	MYRF	Q9Y2G1	1151 aa		3.95	□□□□□ -1.78
CD44-238	ENST00000534296	LOC105371045	A0A1W2PR82	267 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296		A0A1W2PRX2	142 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	PMS2P1	A4D2B8	440 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	CYP27B1	O15528	508 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	SLC26A4	O43511	780 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	PRPF6	O94906	941 aa	Known RBP	3.94	□□□□□ -1.78
CD44-238	ENST00000534296	FSBP	O95073	299 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	FKBP9	O95302	570 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	COMT	P21964	271 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	GYS2	P54840	703 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	PHC1	P78364	1004 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	ICAM4	Q14773	271 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	NOLC1	Q14978	699 aa	Known RBP eCLIP	3.94	□□□□□ -1.78
CD44-238	ENST00000534296	PRKD1	Q15139	912 aa	Predicted RBP	3.94	□□□□□ -1.78
CD44-238	ENST00000534296	DHCR24	Q15392	516 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	DDB1	Q16531	1140 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	ZXDC	Q2QGD7	858 aa	Predicted RBP	3.94	□□□□□ -1.78
CD44-238	ENST00000534296	TCTN3	Q6NUS6	607 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	ESRP1	Q6NXG1	681 aa	Known RBP	3.94	□□□□□ -1.78
CD44-238	ENST00000534296	ZNF585A	Q6P3V2	769 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	LARP4	Q71RC2	724 aa	Known RBP eCLIP	3.94	□□□□□ -1.78
CD44-238	ENST00000534296	FKBP9P1	Q75LS8	142 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	DDX46	Q7L014	1031 aa	Known RBP	3.94	□□□□□ -1.78
CD44-238	ENST00000534296	SHCBP1	Q8NEM2	672 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	CHAC2	Q8WUX2	184 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	RTF1	Q92541	710 aa	Known RBP	3.94	□□□□□ -1.78
CD44-238	ENST00000534296	TTC1	Q99614	292 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	NOL10	Q9BSC4	688 aa	Known RBP	3.94	□□□□□ -1.78
CD44-238	ENST00000534296	MYL10	Q9BUA6	226 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	SSBP3	Q9BWW4	388 aa	Predicted RBP	3.94	□□□□□ -1.78
CD44-238	ENST00000534296	WNT8A	Q9H1J5	351 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	SLC6A15	Q9H2J7	730 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	POFUT1	Q9H488	388 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	MTG2	Q9H4K7	406 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	C14orf93	Q9H972	538 aa	Known RBP	3.94	□□□□□ -1.78
CD44-238	ENST00000534296	MSRA	Q9UJ68	235 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	TSC22D4	Q9Y3Q8	395 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	SLC30A1	Q9Y6M5	507 aa		3.94	□□□□□ -1.78
CD44-238	ENST00000534296	GSG1L2	A8MUP6	293 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	NRP1	O14786	923 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	ZEB2	O60315	1214 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	ULK1	O75385	1050 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	NRG3	P56975	720 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	ADAM15	Q13444	863 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	TCIRG1	Q13488	830 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	MYBPC3	Q14896	1274 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	PCBP1	Q15365	356 aa	Known RBP eCLIP	3.93	□□□□□ -1.78
CD44-238	ENST00000534296	GAGE13	Q4V321	117 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	ATP13A4	Q4VNC1	1196 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	CCDC178	Q5BJE1	867 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	CREB3L3	Q68CJ9	461 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	FRMD7	Q6ZUT3	714 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	ADGRE4P	Q86SQ3	457 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	CDYL2	Q8N8U2	506 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	ZNF610	Q8N9Z0	462 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	DNER	Q8NFT8	737 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	RABGGTA	Q92696	567 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	ADO	Q96SZ5	270 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	PTPN18	Q99952	460 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	PLA2G12B	Q9BX93	195 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	KRTAP4-5	Q9BYR2	181 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	MTFR1L	Q9H019	292 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	IFT22	Q9H7X7	185 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	ZMAT4	Q9H898	229 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	CAAP1	Q9H8G2	361 aa		3.93	□□□□□ -1.78
CD44-238	ENST00000534296	H2AFY2	Q9P0M6	372 aa	Predicted RBP	3.93	□□□□□ -1.78

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