RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ERLIN2O94905 339 aa20.94■□□□□ 0.94
VPS28-213ENST00000530983 FLT3P36888 993 aa20.94■□□□□ 0.94
VPS28-213ENST00000530983 MDH1P40925 334 aaKnown RBP20.94■□□□□ 0.94
VPS28-213ENST00000530983 FMO5P49326 533 aa20.94■□□□□ 0.94
VPS28-213ENST00000530983 PTGISQ16647 500 aa20.94■□□□□ 0.94
VPS28-213ENST00000530983 TPH2Q8IWU9 490 aa20.94■□□□□ 0.94
VPS28-213ENST00000530983 LRRC45Q96CN5 670 aa20.94■□□□□ 0.94
VPS28-213ENST00000530983 DYDC2Q96IM9 177 aa20.94■□□□□ 0.94
VPS28-213ENST00000530983 NCAPGQ9BPX3 1015 aa20.94■□□□□ 0.94
VPS28-213ENST00000530983 GPR88Q9GZN0 384 aa20.94■□□□□ 0.94
VPS28-213ENST00000530983 SLITRK6Q9H5Y7 841 aa20.94■□□□□ 0.94
VPS28-213ENST00000530983 TUFT1Q9NNX1 390 aa20.94■□□□□ 0.94
VPS28-213ENST00000530983 SLX4Q8IY92 1834 aa20.94■□□□□ 0.94
VPS28-213ENST00000530983 NCANO14594 1321 aa20.94■□□□□ 0.94
VPS28-213ENST00000530983 DAPK3O43293 454 aa20.94■□□□□ 0.94
VPS28-213ENST00000530983 BUB1BO60566 1050 aaPredicted RBP20.94■□□□□ 0.94
VPS28-213ENST00000530983 SYT11Q9BT88 431 aa20.94■□□□□ 0.94
VPS28-213ENST00000530983 STK33Q9BYT3 514 aa20.94■□□□□ 0.94
VPS28-213ENST00000530983 PRR12Q9ULL5 1215 aa20.94■□□□□ 0.94
VPS28-213ENST00000530983 IGSF9BQ9UPX0 1349 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 A0A1W2PRG0 241 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 CHMP2AO43633 222 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 GH2P01242 217 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 ZNF844Q08AG5 666 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 DRAP1Q14919 205 aaPredicted RBP20.93■□□□□ 0.94
VPS28-213ENST00000530983 CBWD6Q4V339 395 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 CBWD3Q5JTY5 395 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 CBWD5Q5RIA9 395 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 NAA35Q5VZE5 725 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 SLC35G2Q8TBE7 412 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 SEC14L1Q92503 715 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 MKNK1Q9BUB5 465 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 PARVGQ9HBI0 331 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 DNAJC12Q9UKB3 198 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 MYH11P35749 1972 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 GOLGB1Q14789 3259 aaKnown RBP20.93■□□□□ 0.94
VPS28-213ENST00000530983 GOLGA6L10A6NI86 522 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 GCOM1H8Y6P7 765 aaPredicted RBP20.93■□□□□ 0.94
VPS28-213ENST00000530983 TTI1O43156 1089 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 PPP1R12BO60237 982 aaPredicted RBP20.93■□□□□ 0.94
VPS28-213ENST00000530983 PSMD10O75832 226 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 MYZAPP0CAP1 466 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 ALDH1B1P30837 517 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 CTNNA1P35221 906 aaKnown RBP20.93■□□□□ 0.94
VPS28-213ENST00000530983 B4GALNT4Q76KP1 1039 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 SPICE1Q8N0Z3 855 aa20.93■□□□□ 0.94
VPS28-213ENST00000530983 FRMPD4Q14CM0 1322 aa20.92■□□□□ 0.94
VPS28-213ENST00000530983 ATXN2Q99700 1313 aaKnown RBP20.92■□□□□ 0.94
VPS28-213ENST00000530983 NPM3O75607 178 aaKnown RBP20.92■□□□□ 0.94
VPS28-213ENST00000530983 TMEM253P0C7T8 217 aa20.92■□□□□ 0.94
VPS28-213ENST00000530983 LMNB1P20700 586 aa20.92■□□□□ 0.94
VPS28-213ENST00000530983 POU5F1Q01860 360 aaKnown RBP20.92■□□□□ 0.94
VPS28-213ENST00000530983 RRP1BQ14684 758 aaKnown RBP20.92■□□□□ 0.94
VPS28-213ENST00000530983 DACT2Q5SW24 774 aa20.92■□□□□ 0.94
VPS28-213ENST00000530983 LRCH2Q5VUJ6 765 aa20.92■□□□□ 0.94
VPS28-213ENST00000530983 RFFLQ8WZ73 363 aa20.92■□□□□ 0.94
VPS28-213ENST00000530983 CELF4Q9BZC1 486 aaKnown RBP20.92■□□□□ 0.94
VPS28-213ENST00000530983 CENPHQ9H3R5 247 aa20.92■□□□□ 0.94
VPS28-213ENST00000530983 AMFRQ9UKV5 643 aa20.92■□□□□ 0.94
VPS28-213ENST00000530983 PPP1R9AQ9ULJ8 1098 aa20.92■□□□□ 0.94
VPS28-213ENST00000530983 TTC7AQ9ULT0 858 aaPredicted RBP20.92■□□□□ 0.94
VPS28-213ENST00000530983 LOC102724159A0A0B4J2E5 919 aa20.92■□□□□ 0.94
VPS28-213ENST00000530983 HPDP32754 393 aaPredicted RBP20.92■□□□□ 0.94
VPS28-213ENST00000530983 SEC24CP53992 1094 aa20.92■□□□□ 0.94
VPS28-213ENST00000530983 PPATQ06203 517 aa20.92■□□□□ 0.94
VPS28-213ENST00000530983 PPP2R5CQ13362 524 aa20.92■□□□□ 0.94
VPS28-213ENST00000530983 PWP2Q15269 919 aaKnown RBP20.92■□□□□ 0.94
VPS28-213ENST00000530983 SWT1Q5T5J6 900 aaKnown RBP20.92■□□□□ 0.94
VPS28-213ENST00000530983 DCAF12L1Q5VU92 463 aa20.92■□□□□ 0.94
VPS28-213ENST00000530983 ZNF720Q7Z2F6 126 aa20.92■□□□□ 0.94
VPS28-213ENST00000530983 DMAC2Q9NW81 257 aa20.92■□□□□ 0.94
VPS28-213ENST00000530983 MYO1FO00160 1098 aa20.91■□□□□ 0.94
VPS28-213ENST00000530983 DDX3YO15523 660 aaKnown RBP20.91■□□□□ 0.94
VPS28-213ENST00000530983 ZNF131P52739 623 aa20.91■□□□□ 0.94
VPS28-213ENST00000530983 HDLBPQ00341 1268 aaKnown RBP20.91■□□□□ 0.94
VPS28-213ENST00000530983 STRIP1Q5VSL9 837 aa20.91■□□□□ 0.94
VPS28-213ENST00000530983 CCDC26Q8TAB7 109 aa20.91■□□□□ 0.94
VPS28-213ENST00000530983 ZNF473Q8WTR7 871 aaKnown RBP20.91■□□□□ 0.94
VPS28-213ENST00000530983 PAGR1Q9BTK6 254 aa20.91■□□□□ 0.94
VPS28-213ENST00000530983 AGPAT3Q9NRZ7 376 aa20.91■□□□□ 0.94
VPS28-213ENST00000530983 WRAP73Q9P2S5 460 aaPredicted RBP20.91■□□□□ 0.94
VPS28-213ENST00000530983 NR2E1Q9Y466 385 aa20.91■□□□□ 0.94
VPS28-213ENST00000530983 FGGP02679 453 aa20.9■□□□□ 0.94
VPS28-213ENST00000530983 TRIM49P0CI25 452 aa20.9■□□□□ 0.94
VPS28-213ENST00000530983 TRIM49CP0CI26 452 aa20.9■□□□□ 0.94
VPS28-213ENST00000530983 ABCB4P21439 1286 aa20.9■□□□□ 0.94
VPS28-213ENST00000530983 INPP5BP32019 993 aa20.9■□□□□ 0.94
VPS28-213ENST00000530983 CYP2J2P51589 502 aa20.9■□□□□ 0.94
VPS28-213ENST00000530983 TMC3Q7Z5M5 1100 aa20.9■□□□□ 0.94
VPS28-213ENST00000530983 MYCBPAPQ8TBZ2 947 aa20.9■□□□□ 0.94
VPS28-213ENST00000530983 SLC5A5Q92911 643 aa20.9■□□□□ 0.94
VPS28-213ENST00000530983 MYCBPQ99417 103 aaPredicted RBP20.9■□□□□ 0.94
VPS28-213ENST00000530983 INTS2Q9H0H0 1204 aaKnown RBP20.9■□□□□ 0.94
VPS28-213ENST00000530983 CFBP00751 764 aa20.9■□□□□ 0.94
VPS28-213ENST00000530983 NLRP14Q86W24 1093 aa20.9■□□□□ 0.94
VPS28-213ENST00000530983 UBLCP1Q8WVY7 318 aaPredicted RBP20.9■□□□□ 0.94
VPS28-213ENST00000530983 CCT8L2Q96SF2 557 aa20.9■□□□□ 0.94
VPS28-213ENST00000530983 TMX4Q9H1E5 349 aaPredicted RBP20.9■□□□□ 0.94
VPS28-213ENST00000530983 UBE4BO95155 1302 aa20.9■□□□□ 0.94
VPS28-213ENST00000530983 ATRNL1Q5VV63 1379 aa20.89■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms