RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 CEP89Q96ST8 783 aa14.92□□□□□ -0.02
VPS28-211ENST00000530790 KIF2CQ99661 725 aa14.92□□□□□ -0.02
VPS28-211ENST00000530790 PLVAPQ9BX97 442 aa14.92□□□□□ -0.02
VPS28-211ENST00000530790 CYP26B1Q9NR63 512 aa14.92□□□□□ -0.02
VPS28-211ENST00000530790 PPME1Q9Y570 386 aa14.92□□□□□ -0.02
VPS28-211ENST00000530790 SPTBN5Q9NRC6 3674 aaKnown RBP14.91□□□□□ -0.02
VPS28-211ENST00000530790 IGKV6-21A0A0C4DH24 114 aa14.91□□□□□ -0.02
VPS28-211ENST00000530790 C9IYK1 514 aa14.91□□□□□ -0.02
VPS28-211ENST00000530790 MAFO75444 373 aaPredicted RBP14.91□□□□□ -0.02
VPS28-211ENST00000530790 ZSCAN20P17040 1043 aaPredicted RBP14.91□□□□□ -0.02
VPS28-211ENST00000530790 RBM25P49756 843 aaKnown RBP14.91□□□□□ -0.02
VPS28-211ENST00000530790 GATMP50440 423 aa14.91□□□□□ -0.02
VPS28-211ENST00000530790 KCNQ1P51787 676 aa14.91□□□□□ -0.02
VPS28-211ENST00000530790 GUCY1B3Q02153 619 aa14.91□□□□□ -0.02
VPS28-211ENST00000530790 SPIRE1Q08AE8 756 aa14.91□□□□□ -0.02
VPS28-211ENST00000530790 DRP2Q13474 957 aa14.91□□□□□ -0.02
VPS28-211ENST00000530790 EPHA7Q15375 998 aa14.91□□□□□ -0.02
VPS28-211ENST00000530790 EXOC8Q8IYI6 725 aa14.91□□□□□ -0.02
VPS28-211ENST00000530790 CEP170P1Q96L14 293 aa14.91□□□□□ -0.02
VPS28-211ENST00000530790 GCOM2Q9BZD3 368 aaPredicted RBP14.91□□□□□ -0.02
VPS28-211ENST00000530790 LMAN2LQ9H0V9 348 aa14.91□□□□□ -0.02
VPS28-211ENST00000530790 NSUN3Q9H649 340 aaKnown RBP14.91□□□□□ -0.02
VPS28-211ENST00000530790 UPF2Q9HAU5 1272 aaKnown RBP14.91□□□□□ -0.02
VPS28-211ENST00000530790 ATP6V0A4Q9HBG4 840 aa14.91□□□□□ -0.02
VPS28-211ENST00000530790 TMEM161AQ9NX61 479 aa14.91□□□□□ -0.02
VPS28-211ENST00000530790 EVPLQ92817 2033 aa14.91□□□□□ -0.02
VPS28-211ENST00000530790 TBKBP1A7MCY6 615 aa14.9□□□□□ -0.02
VPS28-211ENST00000530790 SFPQP23246 707 aaKnown RBP eCLIP14.9□□□□□ -0.02
VPS28-211ENST00000530790 YWHABP31946 246 aaKnown RBP14.9□□□□□ -0.02
VPS28-211ENST00000530790 RFC5P40937 340 aa14.9□□□□□ -0.02
VPS28-211ENST00000530790 POLGP54098 1239 aaPredicted RBP14.9□□□□□ -0.02
VPS28-211ENST00000530790 CYP4A11Q02928 519 aa14.9□□□□□ -0.02
VPS28-211ENST00000530790 DSC3Q14574 896 aa14.9□□□□□ -0.02
VPS28-211ENST00000530790 RABEP1Q15276 862 aa14.9□□□□□ -0.02
VPS28-211ENST00000530790 ZNF410Q86VK4 478 aa14.9□□□□□ -0.02
VPS28-211ENST00000530790 RHPN2Q8IUC4 686 aa14.9□□□□□ -0.02
VPS28-211ENST00000530790 C4orf19Q8IY42 314 aa14.9□□□□□ -0.02
VPS28-211ENST00000530790 FAM184AQ8NB25 1140 aa14.9□□□□□ -0.02
VPS28-211ENST00000530790 NEK9Q8TD19 979 aa14.9□□□□□ -0.02
VPS28-211ENST00000530790 DYDC2Q96IM9 177 aa14.9□□□□□ -0.02
VPS28-211ENST00000530790 UHRF1Q96T88 793 aaPredicted RBP14.9□□□□□ -0.02
VPS28-211ENST00000530790 ELAC1Q9H777 363 aaKnown RBP14.9□□□□□ -0.02
VPS28-211ENST00000530790 ZSWIM4Q9H7M6 989 aa14.9□□□□□ -0.02
VPS28-211ENST00000530790 UBE2ZQ9H832 354 aaPredicted RBP14.9□□□□□ -0.02
VPS28-211ENST00000530790 SUCLA2Q9P2R7 463 aaPredicted RBP14.9□□□□□ -0.02
VPS28-211ENST00000530790 WRAP73Q9P2S5 460 aaPredicted RBP14.9□□□□□ -0.02
VPS28-211ENST00000530790 PCDHA12Q9UN75 941 aa14.9□□□□□ -0.02
VPS28-211ENST00000530790 WNT7AO00755 349 aa14.89□□□□□ -0.03
VPS28-211ENST00000530790 HOXA2O43364 376 aa14.89□□□□□ -0.03
VPS28-211ENST00000530790 ST18O60284 1047 aa14.89□□□□□ -0.03
VPS28-211ENST00000530790 FGFR4P22455 802 aa14.89□□□□□ -0.03
VPS28-211ENST00000530790 NPEPPSP55786 919 aa14.89□□□□□ -0.03
VPS28-211ENST00000530790 GNL2Q13823 731 aaKnown RBP14.89□□□□□ -0.03
VPS28-211ENST00000530790 CTTNQ14247 550 aaKnown RBP14.89□□□□□ -0.03
VPS28-211ENST00000530790 NAALADL2Q58DX5 795 aa14.89□□□□□ -0.03
VPS28-211ENST00000530790 TCEAL5Q5H9L2 206 aa14.89□□□□□ -0.03
VPS28-211ENST00000530790 SPOUT1Q5T280 376 aaKnown RBP14.89□□□□□ -0.03
VPS28-211ENST00000530790 OTUD6AQ7L8S5 288 aa14.89□□□□□ -0.03
VPS28-211ENST00000530790 P2RX5Q93086 422 aa14.89□□□□□ -0.03
VPS28-211ENST00000530790 NLRP4Q96MN2 994 aa14.89□□□□□ -0.03
VPS28-211ENST00000530790 INO80BQ9C086 356 aaPredicted RBP14.89□□□□□ -0.03
VPS28-211ENST00000530790 TTC12Q9H892 705 aaPredicted RBP14.89□□□□□ -0.03
VPS28-211ENST00000530790 AAASQ9NRG9 546 aa14.89□□□□□ -0.03
VPS28-211ENST00000530790 RGL1Q9NZL6 768 aa14.89□□□□□ -0.03
VPS28-211ENST00000530790 A0A087WZ62 844 aa14.88□□□□□ -0.03
VPS28-211ENST00000530790 TNFRSF10AO00220 468 aa14.88□□□□□ -0.03
VPS28-211ENST00000530790 GRM6O15303 877 aa14.88□□□□□ -0.03
VPS28-211ENST00000530790 GAS2O43903 313 aaKnown RBP14.88□□□□□ -0.03
VPS28-211ENST00000530790 CSPG5O95196 566 aa14.88□□□□□ -0.03
VPS28-211ENST00000530790 FGFR1P11362 822 aa14.88□□□□□ -0.03
VPS28-211ENST00000530790 BMP1P13497 986 aa14.88□□□□□ -0.03
VPS28-211ENST00000530790 ATP2B1P20020 1258 aa14.88□□□□□ -0.03
VPS28-211ENST00000530790 MCM7P33993 719 aa14.88□□□□□ -0.03
VPS28-211ENST00000530790 TXKP42681 527 aa14.88□□□□□ -0.03
VPS28-211ENST00000530790 FAM189BP81408 668 aa14.88□□□□□ -0.03
VPS28-211ENST00000530790 EMC2Q15006 297 aa14.88□□□□□ -0.03
VPS28-211ENST00000530790 FAM102BQ5T8I3 360 aa14.88□□□□□ -0.03
VPS28-211ENST00000530790 TPH2Q8IWU9 490 aa14.88□□□□□ -0.03
VPS28-211ENST00000530790 ABI1Q8IZP0 508 aa14.88□□□□□ -0.03
VPS28-211ENST00000530790 PSPC1Q8WXF1 523 aaKnown RBP14.88□□□□□ -0.03
VPS28-211ENST00000530790 CCDC43Q96MW1 224 aaKnown RBP14.88□□□□□ -0.03
VPS28-211ENST00000530790 EIF2AK1Q9BQI3 630 aaKnown RBP14.88□□□□□ -0.03
VPS28-211ENST00000530790 FDXACB1Q9BRP7 624 aaPredicted RBP14.88□□□□□ -0.03
VPS28-211ENST00000530790 FOXP1Q9H334 677 aaPredicted RBP14.88□□□□□ -0.03
VPS28-211ENST00000530790 DHX33Q9H6R0 707 aaKnown RBP14.88□□□□□ -0.03
VPS28-211ENST00000530790 BMP2KQ9NSY1 1161 aaPredicted RBP14.88□□□□□ -0.03
VPS28-211ENST00000530790 DACT1Q9NYF0 836 aa14.88□□□□□ -0.03
VPS28-211ENST00000530790 COL4A3BPQ9Y5P4 624 aa14.88□□□□□ -0.03
VPS28-211ENST00000530790 KIAA1671Q9BY89 1806 aa14.87□□□□□ -0.03
VPS28-211ENST00000530790 TTC28Q96AY4 2481 aa14.87□□□□□ -0.03
VPS28-211ENST00000530790 CSDE1O75534 798 aaKnown RBP14.87□□□□□ -0.03
VPS28-211ENST00000530790 ITGB1P05556 798 aa14.87□□□□□ -0.03
VPS28-211ENST00000530790 KCNA5P22460 613 aa14.87□□□□□ -0.03
VPS28-211ENST00000530790 XKR9Q5GH70 373 aa14.87□□□□□ -0.03
VPS28-211ENST00000530790 ECHDC2Q86YB7 292 aa14.87□□□□□ -0.03
VPS28-211ENST00000530790 ZNF579Q8NAF0 562 aaKnown RBP14.87□□□□□ -0.03
VPS28-211ENST00000530790 KLHL23Q8NBE8 558 aa14.87□□□□□ -0.03
VPS28-211ENST00000530790 RNF169Q8NCN4 708 aa14.87□□□□□ -0.03
VPS28-211ENST00000530790 FBXO18Q8NFZ0 1043 aa14.87□□□□□ -0.03
VPS28-211ENST00000530790 TCP11Q8WWU5 503 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms