RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	CT47A1	Q5JQC4	288 aa	Predicted RBP	6.63	□□□□□ -1.35
CD44-223	ENST00000526553	LCE1D	Q5T752	114 aa		6.63	□□□□□ -1.35
CD44-223	ENST00000526553	KLHDC10	Q6PID8	442 aa		6.63	□□□□□ -1.35
CD44-223	ENST00000526553	STRA8	Q7Z7C7	330 aa		6.63	□□□□□ -1.35
CD44-223	ENST00000526553	TTC9B	Q8N6N2	239 aa		6.63	□□□□□ -1.35
CD44-223	ENST00000526553	UBR7	Q8N806	425 aa		6.63	□□□□□ -1.35
CD44-223	ENST00000526553	LPP	Q93052	612 aa		6.63	□□□□□ -1.35
CD44-223	ENST00000526553	NEIL1	Q96FI4	390 aa	Predicted RBP	6.63	□□□□□ -1.35
CD44-223	ENST00000526553	SAMD11	Q96NU1	681 aa		6.63	□□□□□ -1.35
CD44-223	ENST00000526553	POLR3B	Q9NW08	1133 aa	Predicted RBP	6.63	□□□□□ -1.35
CD44-223	ENST00000526553	MSRA	Q9UJ68	235 aa		6.63	□□□□□ -1.35
CD44-223	ENST00000526553	DENND2A	Q9ULE3	1009 aa		6.63	□□□□□ -1.35
CD44-223	ENST00000526553	NR2E1	Q9Y466	385 aa		6.63	□□□□□ -1.35
CD44-223	ENST00000526553	NCAN	O14594	1321 aa		6.62	□□□□□ -1.35
CD44-223	ENST00000526553		A0A0A6YYJ9	748 aa		6.62	□□□□□ -1.35
CD44-223	ENST00000526553	NEMP1	O14524	444 aa		6.62	□□□□□ -1.35
CD44-223	ENST00000526553	BRINP1	O60477	761 aa		6.62	□□□□□ -1.35
CD44-223	ENST00000526553	ULK1	O75385	1050 aa		6.62	□□□□□ -1.35
CD44-223	ENST00000526553	RAC3	P60763	192 aa		6.62	□□□□□ -1.35
CD44-223	ENST00000526553	EFEMP1	Q12805	493 aa		6.62	□□□□□ -1.35
CD44-223	ENST00000526553	TBR1	Q16650	682 aa		6.62	□□□□□ -1.35
CD44-223	ENST00000526553	CIR1	Q86X95	450 aa	Predicted RBP	6.62	□□□□□ -1.35
CD44-223	ENST00000526553	NKD2	Q969F2	451 aa	Predicted RBP	6.62	□□□□□ -1.35
CD44-223	ENST00000526553	GFM2	Q969S9	779 aa	Known RBP	6.62	□□□□□ -1.35
CD44-223	ENST00000526553	ZNF496	Q96IT1	587 aa	Predicted RBP	6.62	□□□□□ -1.35
CD44-223	ENST00000526553	LMF1	Q96S06	567 aa		6.62	□□□□□ -1.35
CD44-223	ENST00000526553	SEMA4A	Q9H3S1	761 aa		6.62	□□□□□ -1.35
CD44-223	ENST00000526553	MTG2	Q9H4K7	406 aa		6.62	□□□□□ -1.35
CD44-223	ENST00000526553	OAZ3	Q9UMX2	235 aa		6.62	□□□□□ -1.35
CD44-223	ENST00000526553	ELL2	O00472	640 aa	Predicted RBP	6.61	□□□□□ -1.35
CD44-223	ENST00000526553	PRRG2	O14669	202 aa		6.61	□□□□□ -1.35
CD44-223	ENST00000526553	GPR42	O15529	346 aa		6.61	□□□□□ -1.35
CD44-223	ENST00000526553	OPHN1	O60890	802 aa		6.61	□□□□□ -1.35
CD44-223	ENST00000526553	H2AFY	O75367	372 aa	Known RBP	6.61	□□□□□ -1.35
CD44-223	ENST00000526553	APOL3	O95236	402 aa		6.61	□□□□□ -1.35
CD44-223	ENST00000526553	CPE	P16870	476 aa		6.61	□□□□□ -1.35
CD44-223	ENST00000526553	ANTXR2	P58335	489 aa		6.61	□□□□□ -1.35
CD44-223	ENST00000526553	BROX	Q5VW32	411 aa		6.61	□□□□□ -1.35
CD44-223	ENST00000526553	FRMD7	Q6ZUT3	714 aa		6.61	□□□□□ -1.35
CD44-223	ENST00000526553	LIMS2	Q7Z4I7	341 aa		6.61	□□□□□ -1.35
CD44-223	ENST00000526553	CFHR4	Q92496	578 aa		6.61	□□□□□ -1.35
CD44-223	ENST00000526553	FERMT2	Q96AC1	680 aa		6.61	□□□□□ -1.35
CD44-223	ENST00000526553	DYDC2	Q96IM9	177 aa		6.61	□□□□□ -1.35
CD44-223	ENST00000526553	PTPN18	Q99952	460 aa		6.61	□□□□□ -1.35
CD44-223	ENST00000526553	CTDP1	Q9Y5B0	961 aa	Predicted RBP	6.61	□□□□□ -1.35
CD44-223	ENST00000526553	ST20-MTHFS	A0A0A6YYL1	179 aa		6.6	□□□□□ -1.35
CD44-223	ENST00000526553	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	6.6	□□□□□ -1.35
CD44-223	ENST00000526553	ID4	P47928	161 aa		6.6	□□□□□ -1.35
CD44-223	ENST00000526553	SESN3	P58005	492 aa		6.6	□□□□□ -1.35
CD44-223	ENST00000526553	HGFAC	Q04756	655 aa		6.6	□□□□□ -1.35
CD44-223	ENST00000526553	SPATS1	Q496A3	300 aa		6.6	□□□□□ -1.35
CD44-223	ENST00000526553	ZBTB41	Q5SVQ8	909 aa		6.6	□□□□□ -1.35
CD44-223	ENST00000526553	UNQ6494/PRO21346	Q6UXR6	183 aa		6.6	□□□□□ -1.35
CD44-223	ENST00000526553	RASSF3	Q86WH2	238 aa		6.6	□□□□□ -1.35
CD44-223	ENST00000526553	CXorf67	Q86X51	503 aa	Predicted RBP	6.6	□□□□□ -1.35
CD44-223	ENST00000526553	DNER	Q8NFT8	737 aa		6.6	□□□□□ -1.35
CD44-223	ENST00000526553	LRRC37B	Q96QE4	947 aa		6.6	□□□□□ -1.35
CD44-223	ENST00000526553	WNT8A	Q9H1J5	351 aa		6.6	□□□□□ -1.35
CD44-223	ENST00000526553	MS4A5	Q9H3V2	200 aa		6.6	□□□□□ -1.35
CD44-223	ENST00000526553	PUF60	Q9UHX1	559 aa	Known RBP	6.6	□□□□□ -1.35
CD44-223	ENST00000526553	FAM184B	Q9ULE4	1060 aa		6.6	□□□□□ -1.35
CD44-223	ENST00000526553	SYNPO2	Q9UMS6	1093 aa		6.6	□□□□□ -1.35
CD44-223	ENST00000526553	MYPN	Q86TC9	1320 aa		6.59	□□□□□ -1.35
CD44-223	ENST00000526553	PMS2P1	A4D2B8	440 aa		6.59	□□□□□ -1.35
CD44-223	ENST00000526553	MATN2	O00339	956 aa		6.59	□□□□□ -1.35
CD44-223	ENST00000526553	KDM1A	O60341	852 aa		6.59	□□□□□ -1.35
CD44-223	ENST00000526553	RAB11FIP3	O75154	756 aa		6.59	□□□□□ -1.35
CD44-223	ENST00000526553	EYA4	O95677	639 aa		6.59	□□□□□ -1.35
CD44-223	ENST00000526553	PFKM	P08237	780 aa		6.59	□□□□□ -1.35
CD44-223	ENST00000526553	CR2	P20023	1033 aa		6.59	□□□□□ -1.35
CD44-223	ENST00000526553	CNGA1	P29973	690 aa		6.59	□□□□□ -1.35
CD44-223	ENST00000526553	ADAM15	Q13444	863 aa		6.59	□□□□□ -1.35
CD44-223	ENST00000526553	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	6.59	□□□□□ -1.35
CD44-223	ENST00000526553	HIST1H2AH	Q96KK5	128 aa		6.59	□□□□□ -1.35
CD44-223	ENST00000526553	WDR92	Q96MX6	357 aa		6.59	□□□□□ -1.35
CD44-223	ENST00000526553	HIST1H2AJ	Q99878	128 aa		6.59	□□□□□ -1.35
CD44-223	ENST00000526553	MAGEL2	Q9UJ55	1249 aa		6.59	□□□□□ -1.35
CD44-223	ENST00000526553	LCHN	A4D1U4	455 aa		6.58	□□□□□ -1.36
CD44-223	ENST00000526553	PATE3	B3GLJ2	98 aa		6.58	□□□□□ -1.36
CD44-223	ENST00000526553	MANF	P55145	182 aa	Known RBP	6.58	□□□□□ -1.36
CD44-223	ENST00000526553	STAT4	Q14765	748 aa		6.58	□□□□□ -1.36
CD44-223	ENST00000526553	TAX1BP1	Q86VP1	789 aa		6.58	□□□□□ -1.36
CD44-223	ENST00000526553	CLRN3	Q8NCR9	226 aa		6.58	□□□□□ -1.36
CD44-223	ENST00000526553	LOXL4	Q96JB6	756 aa		6.58	□□□□□ -1.36
CD44-223	ENST00000526553	DPYSL5	Q9BPU6	564 aa		6.58	□□□□□ -1.36
CD44-223	ENST00000526553	NOL10	Q9BSC4	688 aa	Known RBP	6.58	□□□□□ -1.36
CD44-223	ENST00000526553	OSBPL6	Q9BZF3	934 aa		6.58	□□□□□ -1.36
CD44-223	ENST00000526553	SPC25	Q9HBM1	224 aa		6.58	□□□□□ -1.36
CD44-223	ENST00000526553	SMPD4	Q9NXE4	827 aa		6.58	□□□□□ -1.36
CD44-223	ENST00000526553	NOC2L	Q9Y3T9	749 aa	Known RBP	6.58	□□□□□ -1.36
CD44-223	ENST00000526553	PCDHB6	Q9Y5E3	794 aa		6.58	□□□□□ -1.36
CD44-223	ENST00000526553	PPP2R3B	Q9Y5P8	575 aa		6.58	□□□□□ -1.36
CD44-223	ENST00000526553	DNAJC6	O75061	913 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553	MAGEA10	P43363	369 aa	Predicted RBP	6.57	□□□□□ -1.36
CD44-223	ENST00000526553	GPR15	P49685	360 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553	NFKB2	Q00653	900 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553	DUSP8	Q13202	625 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553	MAN2A1	Q16706	1144 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553	CCDC178	Q5BJE1	867 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553	RNF187	Q5TA31	235 aa	Predicted RBP	6.57	□□□□□ -1.36

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