RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 EFCAB13Q8IY85 973 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 ATP6V1G3Q96LB4 118 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 RNPC3Q96LT9 517 aaKnown RBP12.05□□□□□ -0.48
HDAC9-228ENST00000524023 CSRNP1Q96S65 589 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 FAM107BQ9H098 131 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 DNAJC12Q9UKB3 198 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 SYNPO2Q9UMS6 1093 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 GOLGB1Q14789 3259 aaKnown RBP12.05□□□□□ -0.48
HDAC9-228ENST00000524023 NCANO14594 1321 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 HMGB1P1B2RPK0 211 aaPredicted RBP12.05□□□□□ -0.48
HDAC9-228ENST00000524023 GAS7O60861 476 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 ITGA4P13612 1032 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 LMNB1P20700 586 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 MUTP22033 750 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 HSD17B3P37058 310 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 TRAF1Q13077 416 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 DRAP1Q14919 205 aaPredicted RBP12.05□□□□□ -0.48
HDAC9-228ENST00000524023 CBWD6Q4V339 395 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 CBWD3Q5JTY5 395 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 KIAA1755Q5JYT7 1200 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 CBWD5Q5RIA9 395 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 CEP85LQ5SZL2 805 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 LRIG3Q6UXM1 1119 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 HS2ST1Q7LGA3 356 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 FAM178BQ8IXR5 827 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 PROCA1Q8NCQ7 364 aaPredicted RBP12.05□□□□□ -0.48
HDAC9-228ENST00000524023 PPM1EQ8WY54 764 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 SYT11Q9BT88 431 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 GPR88Q9GZN0 384 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 AMFRQ9UKV5 643 aa12.05□□□□□ -0.48
HDAC9-228ENST00000524023 GCOM1H8Y6P7 765 aaPredicted RBP12.04□□□□□ -0.48
HDAC9-228ENST00000524023 TMEM253P0C7T8 217 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 POLR2MP0CAP2 368 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 CYP2J2P51589 502 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 UAP1Q16222 522 aaPredicted RBP12.04□□□□□ -0.48
HDAC9-228ENST00000524023 STXBP4Q6ZWJ1 553 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 SLC35G2Q8TBE7 412 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 RFFLQ8WZ73 363 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 LRRC45Q96CN5 670 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 PRMT6Q96LA8 375 aaPredicted RBP12.04□□□□□ -0.48
HDAC9-228ENST00000524023 NACC1Q96RE7 527 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 NEUROG2Q9H2A3 272 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 SLITRK6Q9H5Y7 841 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 TMBIM4Q9HC24 238 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 OSGEPQ9NPF4 335 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 AGPAT3Q9NRZ7 376 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 KCND2Q9NZV8 630 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 WRAP73Q9P2S5 460 aaPredicted RBP12.04□□□□□ -0.48
HDAC9-228ENST00000524023 AMACRQ9UHK6 382 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 TTC7AQ9ULT0 858 aaPredicted RBP12.04□□□□□ -0.48
HDAC9-228ENST00000524023 FRMD4BQ9Y2L6 1034 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 FAM169AQ9Y6X4 670 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 BRWD3Q6RI45 1802 aa12.04□□□□□ -0.48
HDAC9-228ENST00000524023 A0A087WUV0 522 aaPredicted RBP12.03□□□□□ -0.48
HDAC9-228ENST00000524023 H0YGN5 161 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 BUB1BO60566 1050 aaPredicted RBP12.03□□□□□ -0.48
HDAC9-228ENST00000524023 TRIM49P0CI25 452 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 TRIM49CP0CI26 452 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 HMGB2P26583 209 aaKnown RBP12.03□□□□□ -0.48
HDAC9-228ENST00000524023 UBXN2AP68543 259 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 GUCY1A3Q02108 690 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 PPP2R5AQ15172 486 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 CEP55Q53EZ4 464 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 ODR4Q5SWX8 454 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 CC2D2BQ6DHV5 1058 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 CCDC174Q6PII3 467 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 ACER1Q8TDN7 264 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 INTS2Q9H0H0 1204 aaKnown RBP12.03□□□□□ -0.48
HDAC9-228ENST00000524023 ARHGEF10LQ9HCE6 1279 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 APEX2Q9UBZ4 518 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 ODF2LQ9ULJ1 636 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 SAMM50Q9Y512 469 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 NFS1Q9Y697 457 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 COL2A1P02458 1487 aaPredicted RBP12.03□□□□□ -0.48
HDAC9-228ENST00000524023 LOXHD1Q8IVV2 1947 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 IGSF9BQ9UPX0 1349 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 NDUFAB1O14561 156 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 ZEB2O60315 1214 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 VIL1P09327 827 aaKnown RBP12.03□□□□□ -0.48
HDAC9-228ENST00000524023 LSP1P33241 339 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 PPATQ06203 517 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 ITGB3BPQ13352 177 aaPredicted RBP12.03□□□□□ -0.48
HDAC9-228ENST00000524023 KRT27Q7Z3Y8 459 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 CCDC26Q8TAB7 109 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 SEC14L1Q92503 715 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 EPN3Q9H201 632 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 UNC45AQ9H3U1 944 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.03□□□□□ -0.48
HDAC9-228ENST00000524023 ZNF219Q9P2Y4 722 aaPredicted RBP12.03□□□□□ -0.48
HDAC9-228ENST00000524023 HERC5Q9UII4 1024 aaKnown RBP12.03□□□□□ -0.48
HDAC9-228ENST00000524023 PPP1R9AQ9ULJ8 1098 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 TMX2Q9Y320 296 aa12.03□□□□□ -0.48
HDAC9-228ENST00000524023 GOLGA6L10A6NI86 522 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 DDX3YO15523 660 aaKnown RBP12.02□□□□□ -0.48
HDAC9-228ENST00000524023 TTI1O43156 1089 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 DAPK3O43293 454 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 CCDC172P0C7W6 258 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 ARP10275 920 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 MYL7Q01449 175 aa12.02□□□□□ -0.48
HDAC9-228ENST00000524023 POU5F1Q01860 360 aaKnown RBP12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms