RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 CHST12Q9NRB3 414 aa18.2■□□□□ 0.5
LSM1-205ENST00000523511 RGL1Q9NZL6 768 aa18.2■□□□□ 0.5
LSM1-205ENST00000523511 ADGRA3Q8IWK6 1321 aa18.2■□□□□ 0.5
LSM1-205ENST00000523511 OR52Z1P0C646 297 aa18.19■□□□□ 0.5
LSM1-205ENST00000523511 SKIP12755 728 aa18.19■□□□□ 0.5
LSM1-205ENST00000523511 U2AF2P26368 475 aaKnown RBP eCLIP18.19■□□□□ 0.52e-7■■■□□ 15.9
LSM1-205ENST00000523511 BMPR1AP36894 532 aa18.19■□□□□ 0.5
LSM1-205ENST00000523511 CYP4A11Q02928 519 aa18.19■□□□□ 0.5
LSM1-205ENST00000523511 SPIRE1Q08AE8 756 aa18.19■□□□□ 0.5
LSM1-205ENST00000523511 NCBP1Q09161 790 aaKnown RBP18.19■□□□□ 0.5
LSM1-205ENST00000523511 GPM6BQ13491 265 aa18.19■□□□□ 0.5
LSM1-205ENST00000523511 PLA2G4FQ68DD2 849 aa18.19■□□□□ 0.5
LSM1-205ENST00000523511 MCTP1Q6DN14 999 aa18.19■□□□□ 0.5
LSM1-205ENST00000523511 FAM228AQ86W67 206 aa18.19■□□□□ 0.5
LSM1-205ENST00000523511 TMEM40Q8WWA1 233 aa18.19■□□□□ 0.5
LSM1-205ENST00000523511 ZNF689Q96CS4 500 aaPredicted RBP18.19■□□□□ 0.5
LSM1-205ENST00000523511 C17orf80Q9BSJ5 609 aa18.19■□□□□ 0.5
LSM1-205ENST00000523511 C11orf84Q9BUA3 381 aaPredicted RBP18.19■□□□□ 0.5
LSM1-205ENST00000523511 PLVAPQ9BX97 442 aa18.19■□□□□ 0.5
LSM1-205ENST00000523511 TMX1Q9H3N1 280 aa18.19■□□□□ 0.5
LSM1-205ENST00000523511 AAASQ9NRG9 546 aa18.19■□□□□ 0.5
LSM1-205ENST00000523511 TMEM161AQ9NX61 479 aa18.19■□□□□ 0.5
LSM1-205ENST00000523511 H3BNC9 293 aa18.18■□□□□ 0.5
LSM1-205ENST00000523511 LAD1O00515 517 aa18.18■□□□□ 0.5
LSM1-205ENST00000523511 ARHGEF15O94989 841 aa18.18■□□□□ 0.5
LSM1-205ENST00000523511 TECP42680 631 aa18.18■□□□□ 0.5
LSM1-205ENST00000523511 NPEPPSP55786 919 aa18.18■□□□□ 0.5
LSM1-205ENST00000523511 MXD4Q14582 209 aaPredicted RBP18.18■□□□□ 0.5
LSM1-205ENST00000523511 NAALADL2Q58DX5 795 aa18.18■□□□□ 0.5
LSM1-205ENST00000523511 ABI1Q8IZP0 508 aa18.18■□□□□ 0.5
LSM1-205ENST00000523511 NACC1Q96RE7 527 aa18.18■□□□□ 0.5
LSM1-205ENST00000523511 SH2D3AQ9BRG2 576 aa18.18■□□□□ 0.5
LSM1-205ENST00000523511 DHX33Q9H6R0 707 aaKnown RBP18.18■□□□□ 0.5
LSM1-205ENST00000523511 TUFT1Q9NNX1 390 aa18.18■□□□□ 0.5
LSM1-205ENST00000523511 THEGQ9P2T0 379 aa18.18■□□□□ 0.5
LSM1-205ENST00000523511 COG5Q9UP83 839 aa18.18■□□□□ 0.5
LSM1-205ENST00000523511 TET1Q8NFU7 2136 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 A0A087WZ62 844 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 TMEM150BA6NC51 233 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 DGAT1O75907 488 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 IBSPP21815 317 aaPredicted RBP18.17■□□□□ 0.5
LSM1-205ENST00000523511 GJB2P29033 226 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 CTNNB1P35222 781 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 FAM189BP81408 668 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 TFDP1Q14186 410 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 PCBP1Q15365 356 aaKnown RBP eCLIP18.17■□□□□ 0.5
LSM1-205ENST00000523511 RILPL1Q5EBL4 403 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 SPOUT1Q5T280 376 aaKnown RBP18.17■□□□□ 0.5
LSM1-205ENST00000523511 HAUS3Q68CZ6 603 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 GDPD5Q8WTR4 605 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 LINC01599Q8WXQ3 324 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 RSPH1Q8WYR4 309 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 CLP1Q92989 425 aaKnown RBP18.17■□□□□ 0.5
LSM1-205ENST00000523511 NLRP4Q96MN2 994 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 CEP89Q96ST8 783 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 MTRQ99707 1265 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 FDXACB1Q9BRP7 624 aaPredicted RBP18.17■□□□□ 0.5
LSM1-205ENST00000523511 BACH2Q9BYV9 841 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 LMAN2LQ9H0V9 348 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 COL4A3BPQ9Y5P4 624 aa18.17■□□□□ 0.5
LSM1-205ENST00000523511 EPOPA6NHQ4 379 aa18.16■□□□□ 0.5
LSM1-205ENST00000523511 C9IYK1 514 aa18.16■□□□□ 0.5
LSM1-205ENST00000523511 C5orf67F2Z3F1 127 aa18.16■□□□□ 0.5
LSM1-205ENST00000523511 EOMESO95936 686 aa18.16■□□□□ 0.5
LSM1-205ENST00000523511 MUTP22033 750 aa18.16■□□□□ 0.5
LSM1-205ENST00000523511 MRPS5P82675 430 aaKnown RBP18.16■□□□□ 0.5
LSM1-205ENST00000523511 PDIA5Q14554 519 aa18.16■□□□□ 0.5
LSM1-205ENST00000523511 CSPP1Q1MSJ5 1256 aa18.16■□□□□ 0.5
LSM1-205ENST00000523511 LARP1BQ659C4 914 aaKnown RBP18.16■□□□□ 0.5
LSM1-205ENST00000523511 SRGAP1Q7Z6B7 1085 aa18.16■□□□□ 0.5
LSM1-205ENST00000523511 CRIPAKQ8N1N5 446 aa18.16■□□□□ 0.5
LSM1-205ENST00000523511 PRPF31Q8WWY3 499 aaKnown RBP18.16■□□□□ 0.5
LSM1-205ENST00000523511 MRPL38Q96DV4 380 aaKnown RBP18.16■□□□□ 0.5
LSM1-205ENST00000523511 POLR3CQ9BUI4 534 aaPredicted RBP18.16■□□□□ 0.5
LSM1-205ENST00000523511 PCDHB12Q9Y5F1 795 aa18.16■□□□□ 0.5
LSM1-205ENST00000523511 DLL1O00548 723 aa18.15■□□□□ 0.5
LSM1-205ENST00000523511 SRGAP2CP0DJJ0 459 aa18.15■□□□□ 0.5
LSM1-205ENST00000523511 PDCP20941 246 aa18.15■□□□□ 0.5
LSM1-205ENST00000523511 DSC3Q14574 896 aa18.15■□□□□ 0.5
LSM1-205ENST00000523511 EMC2Q15006 297 aa18.15■□□□□ 0.5
LSM1-205ENST00000523511 TIGD5Q53EQ6 642 aa18.15■□□□□ 0.5
LSM1-205ENST00000523511 CATSPER4Q7RTX7 472 aa18.15■□□□□ 0.5
LSM1-205ENST00000523511 P2RX5Q93086 422 aa18.15■□□□□ 0.5
LSM1-205ENST00000523511 ZNF668Q96K58 619 aaPredicted RBP18.15■□□□□ 0.5
LSM1-205ENST00000523511 TMEM60Q9H2L4 133 aa18.15■□□□□ 0.5
LSM1-205ENST00000523511 WRAP73Q9P2S5 460 aaPredicted RBP18.15■□□□□ 0.5
LSM1-205ENST00000523511 LRWD1Q9UFC0 647 aa18.15■□□□□ 0.5
LSM1-205ENST00000523511 A0A0U1RQF3 1178 aa18.14■□□□□ 0.49
LSM1-205ENST00000523511 CARNS1A5YM72 827 aa18.14■□□□□ 0.49
LSM1-205ENST00000523511 TBKBP1A7MCY6 615 aa18.14■□□□□ 0.49
LSM1-205ENST00000523511 NCK2O43639 380 aa18.14■□□□□ 0.49
LSM1-205ENST00000523511 MGEA5O60502 916 aa18.14■□□□□ 0.49
LSM1-205ENST00000523511 LPXNO60711 386 aa18.14■□□□□ 0.49
LSM1-205ENST00000523511 RPA1P27694 616 aa18.14■□□□□ 0.49
LSM1-205ENST00000523511 PHKA2P46019 1235 aa18.14■□□□□ 0.49
LSM1-205ENST00000523511 POU5F1BQ06416 359 aa18.14■□□□□ 0.49
LSM1-205ENST00000523511 LAMTOR4Q0VGL1 99 aa18.14■□□□□ 0.49
LSM1-205ENST00000523511 DRP2Q13474 957 aa18.14■□□□□ 0.49
LSM1-205ENST00000523511 TJAP1Q5JTD0 557 aa18.14■□□□□ 0.49
LSM1-205ENST00000523511 DTHD1Q6ZMT9 781 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms