RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 TIPINQ9BVW5 301 aa18.04■□□□□ 0.48
LSM1-204ENST00000522515 HOOK1Q9UJC3 728 aaKnown RBP18.04■□□□□ 0.48
LSM1-204ENST00000522515 ODF2LQ9ULJ1 636 aa18.04■□□□□ 0.48
LSM1-204ENST00000522515 SMIM35A0A1B0GVV1 85 aa18.03■□□□□ 0.48
LSM1-204ENST00000522515 CCDC85CA6NKD9 419 aa18.03■□□□□ 0.48
LSM1-204ENST00000522515 GAS2O43903 313 aaKnown RBP18.03■□□□□ 0.48
LSM1-204ENST00000522515 IDEP14735 1019 aa18.03■□□□□ 0.48
LSM1-204ENST00000522515 ARL2P36404 184 aa18.03■□□□□ 0.48
LSM1-204ENST00000522515 DNM2P50570 870 aa18.03■□□□□ 0.48
LSM1-204ENST00000522515 C1orf53Q5VUE5 145 aa18.03■□□□□ 0.48
LSM1-204ENST00000522515 IER5Q5VY09 327 aa18.03■□□□□ 0.48
LSM1-204ENST00000522515 CAVIN1Q6NZI2 390 aaKnown RBP18.03■□□□□ 0.48
LSM1-204ENST00000522515 SERINC5Q86VE9 423 aa18.03■□□□□ 0.48
LSM1-204ENST00000522515 FAM126BQ8IXS8 530 aa18.03■□□□□ 0.48
LSM1-204ENST00000522515 DNAJB3Q8WWF6 145 aa18.03■□□□□ 0.48
LSM1-204ENST00000522515 TCP11Q8WWU5 503 aa18.03■□□□□ 0.48
LSM1-204ENST00000522515 WNT8BQ93098 351 aa18.03■□□□□ 0.48
LSM1-204ENST00000522515 FAM49AQ9H0Q0 323 aaPredicted RBP18.03■□□□□ 0.48
LSM1-204ENST00000522515 POLR3FQ9H1D9 316 aaPredicted RBP18.03■□□□□ 0.48
LSM1-204ENST00000522515 KLRC4O43908 158 aa18.02■□□□□ 0.48
LSM1-204ENST00000522515 TMOD1P28289 359 aa18.02■□□□□ 0.48
LSM1-204ENST00000522515 LRRC26Q2I0M4 334 aa18.02■□□□□ 0.48
LSM1-204ENST00000522515 TRIM60Q495X7 471 aa18.02■□□□□ 0.48
LSM1-204ENST00000522515 PRPF31Q8WWY3 499 aaKnown RBP18.02■□□□□ 0.48
LSM1-204ENST00000522515 KIFAP3Q92845 792 aa18.02■□□□□ 0.48
LSM1-204ENST00000522515 DRC1Q96MC2 740 aa18.02■□□□□ 0.48
LSM1-204ENST00000522515 ZHX3Q9H4I2 956 aa18.02■□□□□ 0.48
LSM1-204ENST00000522515 SUCLA2Q9P2R7 463 aaPredicted RBP18.02■□□□□ 0.48
LSM1-204ENST00000522515 NOD1Q9Y239 953 aa18.02■□□□□ 0.48
LSM1-204ENST00000522515 PCDHA5Q9Y5H7 936 aa18.02■□□□□ 0.48
LSM1-204ENST00000522515 FRMD3A2A2Y4 597 aa18.01■□□□□ 0.47
LSM1-204ENST00000522515 PQBP1O60828 265 aaKnown RBP18.01■□□□□ 0.47
LSM1-204ENST00000522515 TBCAO75347 108 aaKnown RBP18.01■□□□□ 0.47
LSM1-204ENST00000522515 FAM13AO94988 1023 aa18.01■□□□□ 0.47
LSM1-204ENST00000522515 CD4P01730 458 aa18.01■□□□□ 0.47
LSM1-204ENST00000522515 VTNP04004 478 aa18.01■□□□□ 0.47
LSM1-204ENST00000522515 RPN1P04843 607 aaKnown RBP18.01■□□□□ 0.47
LSM1-204ENST00000522515 ZNF131P52739 623 aa18.01■□□□□ 0.47
LSM1-204ENST00000522515 PTK7Q13308 1070 aa18.01■□□□□ 0.47
LSM1-204ENST00000522515 TAF2Q6P1X5 1199 aa18.01■□□□□ 0.47
LSM1-204ENST00000522515 UNC13DQ70J99 1090 aa18.01■□□□□ 0.47
LSM1-204ENST00000522515 ANKRD33Q7Z3H0 272 aa18.01■□□□□ 0.47
LSM1-204ENST00000522515 KSR1Q8IVT5 923 aa18.01■□□□□ 0.47
LSM1-204ENST00000522515 ASAP3Q8TDY4 903 aa18.01■□□□□ 0.47
LSM1-204ENST00000522515 PSPC1Q8WXF1 523 aaKnown RBP18.01■□□□□ 0.47
LSM1-204ENST00000522515 BSNDQ8WZ55 320 aa18.01■□□□□ 0.47
LSM1-204ENST00000522515 PANK4Q9NVE7 773 aa18.01■□□□□ 0.47
LSM1-204ENST00000522515 AKT3Q9Y243 479 aa18.01■□□□□ 0.47
LSM1-204ENST00000522515 MROH7Q68CQ1 1323 aa18.01■□□□□ 0.47
LSM1-204ENST00000522515 MKI67P46013 3256 aaKnown RBP18.01■□□□□ 0.47
LSM1-204ENST00000522515 PVALEFA0A1B0GWK0 134 aa18■□□□□ 0.47
LSM1-204ENST00000522515 GLRA2P23416 452 aa18■□□□□ 0.47
LSM1-204ENST00000522515 RTP1P59025 263 aa18■□□□□ 0.47
LSM1-204ENST00000522515 TLE2Q04725 743 aa18■□□□□ 0.47
LSM1-204ENST00000522515 TMEM62Q0P6H9 643 aa18■□□□□ 0.47
LSM1-204ENST00000522515 CCDC183Q5T5S1 534 aa18■□□□□ 0.47
LSM1-204ENST00000522515 RHPN2Q8IUC4 686 aa18■□□□□ 0.47
LSM1-204ENST00000522515 CCDC65Q8IXS2 484 aa18■□□□□ 0.47
LSM1-204ENST00000522515 SPATA20Q8TB22 786 aa18■□□□□ 0.47
LSM1-204ENST00000522515 DHX38Q92620 1227 aaKnown RBP18■□□□□ 0.47
LSM1-204ENST00000522515 MAP7D2Q96T17 732 aa18■□□□□ 0.47
LSM1-204ENST00000522515 PARVGQ9HBI0 331 aa18■□□□□ 0.47
LSM1-204ENST00000522515 ATP11BQ9Y2G3 1177 aa18■□□□□ 0.47
LSM1-204ENST00000522515 COL4A3BPQ9Y5P4 624 aa18■□□□□ 0.47
LSM1-204ENST00000522515 PLS3P13797 630 aa18■□□□□ 0.47
LSM1-204ENST00000522515 SARSP49591 514 aaKnown RBP18■□□□□ 0.47
LSM1-204ENST00000522515 LAMTOR4Q0VGL1 99 aa18■□□□□ 0.47
LSM1-204ENST00000522515 COASYQ13057 564 aa18■□□□□ 0.47
LSM1-204ENST00000522515 KMT5BQ4FZB7 885 aa18■□□□□ 0.47
LSM1-204ENST00000522515 HERC4Q5GLZ8 1057 aaPredicted RBP18■□□□□ 0.47
LSM1-204ENST00000522515 SFR1Q86XK3 245 aa18■□□□□ 0.47
LSM1-204ENST00000522515 MYCT1Q8N699 235 aa18■□□□□ 0.47
LSM1-204ENST00000522515 SMARCE1Q969G3 411 aa18■□□□□ 0.47
LSM1-204ENST00000522515 ZNF668Q96K58 619 aaPredicted RBP18■□□□□ 0.47
LSM1-204ENST00000522515 TOX2Q96NM4 488 aa18■□□□□ 0.47
LSM1-204ENST00000522515 PPP1R16BQ96T49 567 aa18■□□□□ 0.47
LSM1-204ENST00000522515 KIAA1468Q9P260 1216 aa18■□□□□ 0.47
LSM1-204ENST00000522515 MYH11P35749 1972 aa17.99■□□□□ 0.47
LSM1-204ENST00000522515 DCDC2CA8MYV0 355 aa17.99■□□□□ 0.47
LSM1-204ENST00000522515 SMC2O95347 1197 aa17.99■□□□□ 0.47
LSM1-204ENST00000522515 PEX3P56589 373 aa17.99■□□□□ 0.47
LSM1-204ENST00000522515 EHHADHQ08426 723 aa17.99■□□□□ 0.47
LSM1-204ENST00000522515 CAPSQ13938 189 aa17.99■□□□□ 0.47
LSM1-204ENST00000522515 MXD4Q14582 209 aaPredicted RBP17.99■□□□□ 0.47
LSM1-204ENST00000522515 TRIM71Q2Q1W2 868 aaKnown RBP17.99■□□□□ 0.47
LSM1-204ENST00000522515 ODR4Q5SWX8 454 aa17.99■□□□□ 0.47
LSM1-204ENST00000522515 HPS3Q969F9 1004 aa17.99■□□□□ 0.47
LSM1-204ENST00000522515 SYAP1Q96A49 352 aaPredicted RBP17.99■□□□□ 0.47
LSM1-204ENST00000522515 C17orf75Q9HAS0 396 aa17.99■□□□□ 0.47
LSM1-204ENST00000522515 LARSQ9P2J5 1176 aaKnown RBP17.99■□□□□ 0.47
LSM1-204ENST00000522515 TLR3O15455 904 aaKnown RBP17.98■□□□□ 0.47
LSM1-204ENST00000522515 ASAP2O43150 1006 aa17.98■□□□□ 0.47
LSM1-204ENST00000522515 SRGAP2CP0DJJ0 459 aa17.98■□□□□ 0.47
LSM1-204ENST00000522515 GAP43P17677 238 aa17.98■□□□□ 0.47
LSM1-204ENST00000522515 NPTX2P47972 431 aa17.98■□□□□ 0.47
LSM1-204ENST00000522515 NLRP11P59045 1033 aaKnown RBP17.98■□□□□ 0.47
LSM1-204ENST00000522515 FAAP100Q0VG06 881 aa17.98■□□□□ 0.47
LSM1-204ENST00000522515 NT5DC1Q5TFE4 455 aa17.98■□□□□ 0.47
LSM1-204ENST00000522515 RBM43Q6ZSC3 357 aaKnown RBP17.98■□□□□ 0.47
LSM1-204ENST00000522515 RPAINQ86UA6 219 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms