RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 PACSIN1Q9BY11 444 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 USTQ9Y2C2 406 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 MYH6P13533 1939 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 H0YHG0 523 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 FMO5P49326 533 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 CLK2P49760 499 aaKnown RBP11.03□□□□□ -0.64
MCF2-209ENST00000520602 KRT76Q01546 638 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 EAPPQ56P03 285 aaPredicted RBP11.03□□□□□ -0.64
MCF2-209ENST00000520602 SIAH1Q8IUQ4 282 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 SLC7A3Q8WY07 619 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 NT5C1BQ96P26 610 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 PLIN4Q96Q06 1357 aa11.02□□□□□ -0.64
MCF2-209ENST00000520602 COL4A1P02462 1669 aa11.02□□□□□ -0.64
MCF2-209ENST00000520602 CASZ1Q86V15 1759 aa11.02□□□□□ -0.64
MCF2-209ENST00000520602 PSAPP07602 524 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 PON1P27169 355 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 JAK3P52333 1124 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 MEA1Q16626 185 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 TKFCQ3LXA3 575 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 KCTD16Q68DU8 428 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 RSRC2Q7L4I2 434 aaKnown RBP11.02□□□□□ -0.65
MCF2-209ENST00000520602 FAM83AQ86UY5 434 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 METTL13Q8N6R0 699 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 PROCA1Q8NCQ7 364 aaPredicted RBP11.02□□□□□ -0.65
MCF2-209ENST00000520602 ZNF280CQ8ND82 737 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 NEK9Q8TD19 979 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 PURBQ96QR8 312 aaKnown RBP11.02□□□□□ -0.65
MCF2-209ENST00000520602 C1orf112Q9NSG2 853 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 ZNF446Q9NWS9 450 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 NFU1Q9UMS0 254 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 UTP11Q9Y3A2 253 aaKnown RBP11.02□□□□□ -0.65
MCF2-209ENST00000520602 CACNA1SQ13698 1873 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 CYP3A7-CYP3A51PA0A087WV96 503 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 NKRFO15226 690 aaKnown RBP eCLIP11.02□□□□□ -0.65
MCF2-209ENST00000520602 CYP3A7P24462 503 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 MARK3P27448 753 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 TRAPPC11Q7Z392 1133 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 SYNCQ9H7C4 482 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 FAM204AQ9H8W3 233 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 AGPAT3Q9NRZ7 376 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 RASAL2Q9UJF2 1139 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 ODF2LQ9ULJ1 636 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 PCDHA10Q9Y5I2 948 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 EVI5O60447 810 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 CTNND1O60716 968 aaKnown RBP11.02□□□□□ -0.65
MCF2-209ENST00000520602 TBC1D8O95759 1140 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 VCAM1P19320 739 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 PPP1R7Q15435 360 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 GGA3Q9NZ52 723 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 MTUS1Q9ULD2 1270 aa11.02□□□□□ -0.65
MCF2-209ENST00000520602 ZSCAN20P17040 1043 aaPredicted RBP11.01□□□□□ -0.65
MCF2-209ENST00000520602 CTNNA2P26232 953 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 PDE6CP51160 858 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 MFAP3P55082 362 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 KCNMA1Q12791 1236 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 TTC19Q6DKK2 380 aaPredicted RBP11.01□□□□□ -0.65
MCF2-209ENST00000520602 ZNF668Q96K58 619 aaPredicted RBP11.01□□□□□ -0.65
MCF2-209ENST00000520602 NAP1L3Q99457 506 aaPredicted RBP11.01□□□□□ -0.65
MCF2-209ENST00000520602 FAM213AQ9BRX8 229 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 BCAS3Q9H6U6 928 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 STIM2Q9P246 746 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 LRP5O75197 1615 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 PGRMC1O00264 195 aaKnown RBP11.01□□□□□ -0.65
MCF2-209ENST00000520602 RNF40O75150 1001 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 PLA2G4AP47712 749 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 C10orf76Q5T2E6 689 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 MIS18BP1Q6P0N0 1132 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 SYTL5Q8TDW5 730 aaPredicted RBP11.01□□□□□ -0.65
MCF2-209ENST00000520602 SLC16A10Q8TF71 515 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 MTMR8Q96EF0 704 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 CDHR1Q96JP9 859 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 PSMD1Q99460 953 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 HOXC10Q9NYD6 342 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 ADAM21Q9UKJ8 722 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 C4BP0C0L5 1744 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 NPM3O75607 178 aaKnown RBP11.01□□□□□ -0.65
MCF2-209ENST00000520602 KRT19P08727 400 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 CIITAP33076 1130 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 SOX5P35711 763 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 IGBP1P78318 339 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 PLCB3Q01970 1234 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 TRPC3Q13507 836 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 MUM1L1Q5H9M0 696 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 LMBRD2Q68DH5 695 aaPredicted RBP11.01□□□□□ -0.65
MCF2-209ENST00000520602 ZNF720Q7Z2F6 126 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 CCDC105Q8IYK2 499 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 ANKZF1Q9H8Y5 726 aa11.01□□□□□ -0.65
MCF2-209ENST00000520602 K7ERI5 159 aa11□□□□□ -0.65
MCF2-209ENST00000520602 SLC16A3O15427 465 aaKnown RBP11□□□□□ -0.65
MCF2-209ENST00000520602 SLC26A4O43511 780 aa11□□□□□ -0.65
MCF2-209ENST00000520602 KIAA0754O94854 1291 aa11□□□□□ -0.65
MCF2-209ENST00000520602 MYCNP04198 464 aaPredicted RBP11□□□□□ -0.65
MCF2-209ENST00000520602 ATP1A2P50993 1020 aa11□□□□□ -0.65
MCF2-209ENST00000520602 BFSP1Q12934 665 aa11□□□□□ -0.65
MCF2-209ENST00000520602 ZNF211Q13398 564 aaPredicted RBP11□□□□□ -0.65
MCF2-209ENST00000520602 BTNL9Q6UXG8 535 aa11□□□□□ -0.65
MCF2-209ENST00000520602 IL31RAQ8NI17 732 aa11□□□□□ -0.65
MCF2-209ENST00000520602 FAM71BQ8TC56 605 aa11□□□□□ -0.65
MCF2-209ENST00000520602 ZNF653Q96CK0 615 aa11□□□□□ -0.65
MCF2-209ENST00000520602 CCDC114Q96M63 670 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms