RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 TBX22Q9Y458 520 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 NFS1Q9Y697 457 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 TMEM120BA0PK00 339 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 PEX14O75381 377 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 UQCRFS1P1P0C7P4 283 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 RARAP10276 462 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 ATF3P18847 181 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 TROAPQ12815 778 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 CYP4F22Q6NT55 531 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 SUPT20HQ8NEM7 779 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 ERGIC2Q96RQ1 377 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 ERVK-5Q9HDB9 667 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 TSKSQ9UJT2 592 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 ATP6V0A2Q9Y487 856 aa10.88□□□□□ -0.67
PDGFRB-207ENST00000520579 TCRBV5S4A2TA0A5A2 114 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 CBX6O95503 412 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 DYNC1I2Q13409 638 aaKnown RBP10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 CUL1Q13616 776 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 RCN1Q15293 331 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 SEPT7Q16181 437 aaKnown RBP10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 FAAH2Q6GMR7 532 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 RNF25Q96BH1 459 aaPredicted RBP10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 ELMO3Q96BJ8 720 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 CLIP3Q96DZ5 547 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 IFT74Q96LB3 600 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 DCTN4Q9UJW0 460 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 CCDC160A6NGH7 325 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 OR52Z1P0C646 297 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 ECHS1P30084 290 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 SERPINB4P48594 390 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 COPS2P61201 443 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 AMPD3Q01432 767 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 LRRC36Q1X8D7 754 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 FAM182AQ5T1J6 154 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 BARGINQ6ZT62 677 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 ZNF571Q7Z3V5 609 aaPredicted RBP10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 GLYCTKQ8IVS8 523 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 GALNT15Q8N3T1 639 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 USP33Q8TEY7 942 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 DCAF5Q96JK2 942 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 SYT15Q9BQS2 421 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 SLC5A4Q9NY91 659 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 USP15Q9Y4E8 981 aaPredicted RBP10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 WDR19Q8NEZ3 1342 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 CNTNAP5Q8WYK1 1306 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 NRXN3Q9Y4C0 1643 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 CRYBG1Q9Y4K1 1723 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 MEIS1O00470 390 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 USP17L8P0C7I0 530 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 EPHB2P29323 1055 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 HOXD11P31277 338 aaPredicted RBP10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 TMED1Q13445 227 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 PUM3Q15397 648 aaKnown RBP10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 EXOC3L4Q17RC7 722 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 HGSNATQ68CP4 663 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 NME8Q8N427 588 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 FITM2Q8N6M3 262 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 DTNBP1Q96EV8 351 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 KLHL14Q9P2G3 628 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 CHMP2BQ9UQN3 213 aa10.87□□□□□ -0.67
PDGFRB-207ENST00000520579 SFI1A8K8P3 1242 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 CETN3O15182 167 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 SEC23AQ15436 765 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 SLC18A3Q16572 532 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 KCNK18Q7Z418 384 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 PALB2Q86YC2 1186 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 ASIC3Q9UHC3 531 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 AMFRQ9UKV5 643 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 ABCC12Q96J65 1359 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 CCDC169A6NNP5 214 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 TDP2O95551 362 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 H2AFZP0C0S5 128 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 CTSWP56202 376 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 ADAM9Q13443 819 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 P3H1Q32P28 736 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 H2AFVQ71UI9 128 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 TBCKQ8TEA7 893 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 OPTNQ96CV9 577 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 FAM163AQ96GL9 167 aaPredicted RBP10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 ACSBG1Q96GR2 724 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 TGS1Q96RS0 853 aaKnown RBP10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 CORO1BQ9BR76 489 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 NIP7Q9Y221 180 aaKnown RBP eCLIP10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 FRMPD2Q68DX3 1309 aaPredicted RBP10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 WDR17Q8IZU2 1322 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 SMCO2A6NFE2 343 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 UNCXA6NJT0 531 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 ATMINO43313 823 aaPredicted RBP10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 LUC7L3O95232 432 aaKnown RBP10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 PRLRP16471 622 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 ZFXP17010 805 aaPredicted RBP10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 GBP1P32455 592 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 CPA2P48052 419 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 DNAJC3Q13217 504 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 MESDQ14696 234 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 MDH1BQ5I0G3 518 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 USP17L2Q6R6M4 530 aa10.86□□□□□ -0.67
PDGFRB-207ENST00000520579 MTHFD1LQ6UB35 978 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms