RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PGM3O95394 542 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 MECOMQ03112 1051 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 PTGDRQ13258 359 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 NAB2Q15742 525 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 C6orf183Q5T699 404 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 TBC1D9BQ66K14 1250 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 RNF43Q68DV7 783 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 SCYL3Q8IZE3 742 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 CDK5RAP3Q96JB5 506 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 ADAMTS1Q9UHI8 967 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 EIF3FO00303 357 aaPredicted RBP12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 BAG2O95816 211 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 HALP42357 657 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 CDR2Q01850 454 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 AUHQ13825 339 aaKnown RBP12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 METTL13Q8N6R0 699 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 ANKS1AQ92625 1134 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 GLG1Q92896 1179 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 LUC7LQ9NQ29 371 aaKnown RBP12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 KRT82Q9NSB4 513 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 DNAJC17Q9NVM6 304 aaKnown RBP12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 AP1B1Q10567 949 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 TMEM259Q4ZIN3 620 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 BARGINQ6ZT62 677 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 RBM46Q8TBY0 533 aaKnown RBP12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 FBXO25Q8TCJ0 367 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 STMN4Q9H169 189 aaPredicted RBP12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 DOLKQ9UPQ8 538 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 PTPRMP28827 1452 aa12.95□□□□□ -0.34
LIMCH1-213ENST00000511496 NEXMIFQ5QGS0 1516 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 A0A1W2PQJ5 194 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 IPO5O00410 1097 aaKnown RBP12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 LCA5LO95447 670 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 PSMG1O95456 288 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 T-ENOLP0DO92 83 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 VPS41P49754 854 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 ARFIP2P53365 341 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 GPSM2P81274 684 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 PTPN12Q05209 780 aaKnown RBP12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 TNIP1Q15025 636 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 GSTA3Q16772 222 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 MIIPQ5JXC2 388 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 LMBRD2Q68DH5 695 aaPredicted RBP12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 ANKRD40Q6AI12 368 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 TTLL11Q8NHH1 800 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 INPP5DQ92835 1189 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 ZKSCAN3Q9BRR0 538 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 MAPK13O15264 365 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 FOXP2O15409 715 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 NUDT17P0C025 328 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 GSTT2P0CG29 244 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 GSTT2BP0CG30 244 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 LRRC36Q1X8D7 754 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 EAPPQ56P03 285 aaPredicted RBP12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 TTI2Q6NXR4 508 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 CCDC174Q6PII3 467 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 SLC2A7Q6PXP3 512 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 DUSP9Q99956 384 aaKnown RBP12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 RTCBQ9Y3I0 505 aaKnown RBP12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 NUB1Q9Y5A7 615 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 PPLO60437 1756 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 ADCY3O60266 1144 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 RNASEH1O60930 286 aaKnown RBP12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 CDK4P11802 303 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 POLGP54098 1239 aaPredicted RBP12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 POLR2FP61218 127 aaKnown RBP12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 UBE4AQ14139 1066 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 SLC9C1Q4G0N8 1177 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 PDXDC2PQ6P474 469 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 CKAP2Q8WWK9 683 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 ESR2Q92731 530 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 MCUR1Q96AQ8 359 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 CENPOQ9BU64 300 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 TCP11L1Q9NUJ3 509 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 NR2E1Q9Y466 385 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 MROH7Q68CQ1 1323 aa12.94□□□□□ -0.34
LIMCH1-213ENST00000511496 CPDO75976 1380 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 VPS52Q8N1B4 723 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 PPP2R3CQ969Q6 453 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 PPP1R14BQ96C90 147 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 ERGIC2Q96RQ1 377 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 PUS7LQ9H0K6 701 aaKnown RBP12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 LGR6Q9HBX8 967 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 TBK1Q9UHD2 729 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 PRAMEF22A3QJZ6 481 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 BTBD11A6QL63 1104 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 ECE2O60344 883 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 PRDM1O75626 825 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 PABPC4LP0CB38 370 aaKnown RBP12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 HARSP12081 509 aaKnown RBP12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 BRAFP15056 766 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 HNRNPH3P31942 346 aaKnown RBP12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 DCTN2Q13561 401 aaKnown RBP12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 THOC5Q13769 683 aaKnown RBP12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 KLHL35Q6PF15 583 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 TBC1D10CQ8IV04 446 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 SH3TC2Q8TF17 1288 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 FNBP1Q96RU3 617 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 CRAMP1Q96RY5 1269 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms