RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 SFPQP23246 707 aaKnown RBP eCLIP18.58■□□□□ 0.56
SNCA-209ENST00000506244 NFX1Q12986 1120 aaKnown RBP18.58■□□□□ 0.56
SNCA-209ENST00000506244 DRP2Q13474 957 aa18.58■□□□□ 0.56
SNCA-209ENST00000506244 MXD4Q14582 209 aaPredicted RBP18.58■□□□□ 0.56
SNCA-209ENST00000506244 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.58■□□□□ 0.56
SNCA-209ENST00000506244 FAM228AQ86W67 206 aa18.58■□□□□ 0.56
SNCA-209ENST00000506244 KCTD17Q8N5Z5 321 aa18.58■□□□□ 0.56
SNCA-209ENST00000506244 ZNF579Q8NAF0 562 aaKnown RBP18.58■□□□□ 0.56
SNCA-209ENST00000506244 MCPH1Q8NEM0 835 aa18.58■□□□□ 0.56
SNCA-209ENST00000506244 NLRP4Q96MN2 994 aa18.58■□□□□ 0.56
SNCA-209ENST00000506244 RAD9AQ99638 391 aa18.58■□□□□ 0.56
SNCA-209ENST00000506244 TSPYL2Q9H2G4 693 aaPredicted RBP18.58■□□□□ 0.56
SNCA-209ENST00000506244 NKX2-4Q9H2Z4 354 aa18.58■□□□□ 0.56
SNCA-209ENST00000506244 ZNF576Q9H609 170 aa18.58■□□□□ 0.56
SNCA-209ENST00000506244 CDHR5Q9HBB8 845 aa18.58■□□□□ 0.56
SNCA-209ENST00000506244 C1orf112Q9NSG2 853 aa18.58■□□□□ 0.56
SNCA-209ENST00000506244 YBX2Q9Y2T7 364 aaKnown RBP18.58■□□□□ 0.56
SNCA-209ENST00000506244 COL4A6Q14031 1691 aa18.57■□□□□ 0.56
SNCA-209ENST00000506244 SZT2Q5T011 3432 aa18.57■□□□□ 0.56
SNCA-209ENST00000506244 DENND3A2RUS2 1198 aa18.57■□□□□ 0.56
SNCA-209ENST00000506244 ARHGEF35A5YM69 484 aa18.57■□□□□ 0.56
SNCA-209ENST00000506244 ZBTB39O15060 712 aa18.57■□□□□ 0.56
SNCA-209ENST00000506244 SLC26A4O43511 780 aa18.57■□□□□ 0.56
SNCA-209ENST00000506244 BECN1Q14457 450 aa18.57■□□□□ 0.56
SNCA-209ENST00000506244 SF3A1Q15459 793 aaKnown RBP18.57■□□□□ 0.56
SNCA-209ENST00000506244 Q7L0L9 218 aa18.57■□□□□ 0.56
SNCA-209ENST00000506244 TOP1MTQ969P6 601 aa18.57■□□□□ 0.56
SNCA-209ENST00000506244 NT5C3AQ9H0P0 336 aa18.57■□□□□ 0.56
SNCA-209ENST00000506244 BMP2KQ9NSY1 1161 aaPredicted RBP18.57■□□□□ 0.56
SNCA-209ENST00000506244 ST3GAL5Q9UNP4 418 aa18.57■□□□□ 0.56
SNCA-209ENST00000506244 INSL6Q9Y581 213 aa18.57■□□□□ 0.56
SNCA-209ENST00000506244 LAMA2P24043 3122 aaKnown RBP18.57■□□□□ 0.56
SNCA-209ENST00000506244 USO1O60763 962 aaKnown RBP18.56■□□□□ 0.56
SNCA-209ENST00000506244 CA3P07451 260 aa18.56■□□□□ 0.56
SNCA-209ENST00000506244 STAG3L1P0CL83 205 aa18.56■□□□□ 0.56
SNCA-209ENST00000506244 TFDP1Q14186 410 aa18.56■□□□□ 0.56
SNCA-209ENST00000506244 PRPF31Q8WWY3 499 aaKnown RBP18.56■□□□□ 0.56
SNCA-209ENST00000506244 TMEM143Q96AN5 459 aa18.56■□□□□ 0.56
SNCA-209ENST00000506244 CDK5RAP3Q96JB5 506 aa18.56■□□□□ 0.56
SNCA-209ENST00000506244 YME1L1Q96TA2 773 aa18.56■□□□□ 0.56
SNCA-209ENST00000506244 TTYH1Q9H313 450 aaPredicted RBP18.56■□□□□ 0.56
SNCA-209ENST00000506244 SEMA6BQ9H3T3 888 aa18.56■□□□□ 0.56
SNCA-209ENST00000506244 DDX19AQ9NUU7 478 aaKnown RBP18.56■□□□□ 0.56
SNCA-209ENST00000506244 MTMR10Q9NXD2 777 aa18.56■□□□□ 0.56
SNCA-209ENST00000506244 KIAA1024Q9UPX6 916 aa18.56■□□□□ 0.56
SNCA-209ENST00000506244 A0A087WZ62 844 aa18.55■□□□□ 0.56
SNCA-209ENST00000506244 ENPP3O14638 875 aa18.55■□□□□ 0.56
SNCA-209ENST00000506244 SLC34A2O95436 690 aa18.55■□□□□ 0.56
SNCA-209ENST00000506244 ZSCAN20P17040 1043 aaPredicted RBP18.55■□□□□ 0.56
SNCA-209ENST00000506244 LONP1P36776 959 aaKnown RBP18.55■□□□□ 0.56
SNCA-209ENST00000506244 PHKA2P46019 1235 aa18.55■□□□□ 0.56
SNCA-209ENST00000506244 HTRA4P83105 476 aaPredicted RBP18.55■□□□□ 0.56
SNCA-209ENST00000506244 LAMTOR4Q0VGL1 99 aa18.55■□□□□ 0.56
SNCA-209ENST00000506244 IL17AQ16552 155 aa18.55■□□□□ 0.56
SNCA-209ENST00000506244 FAM117BQ6P1L5 589 aa18.55■□□□□ 0.56
SNCA-209ENST00000506244 NPAS4Q8IUM7 802 aa18.55■□□□□ 0.56
SNCA-209ENST00000506244 LINC01599Q8WXQ3 324 aa18.55■□□□□ 0.56
SNCA-209ENST00000506244 FAM161BQ96MY7 647 aa18.55■□□□□ 0.56
SNCA-209ENST00000506244 FDXACB1Q9BRP7 624 aaPredicted RBP18.55■□□□□ 0.56
SNCA-209ENST00000506244 TMX1Q9H3N1 280 aa18.55■□□□□ 0.56
SNCA-209ENST00000506244 XPNPEP1Q9NQW7 623 aa18.55■□□□□ 0.56
SNCA-209ENST00000506244 DNM3Q9UQ16 869 aa18.55■□□□□ 0.56
SNCA-209ENST00000506244 PP2D1A8MPX8 630 aa18.54■□□□□ 0.56
SNCA-209ENST00000506244 UPP2O95045 317 aa18.54■□□□□ 0.56
SNCA-209ENST00000506244 MYOGP15173 224 aa18.54■□□□□ 0.56
SNCA-209ENST00000506244 PCBP1Q15365 356 aaKnown RBP eCLIP18.54■□□□□ 0.56
SNCA-209ENST00000506244 SRGAP1Q7Z6B7 1085 aa18.54■□□□□ 0.56
SNCA-209ENST00000506244 TMCO2Q7Z6W1 182 aaPredicted RBP18.54■□□□□ 0.56
SNCA-209ENST00000506244 ZNF668Q96K58 619 aaPredicted RBP18.54■□□□□ 0.56
SNCA-209ENST00000506244 ZNF396Q96N95 335 aaPredicted RBP18.54■□□□□ 0.56
SNCA-209ENST00000506244 ADAM2Q99965 735 aa18.54■□□□□ 0.56
SNCA-209ENST00000506244 BHMT2Q9H2M3 363 aa18.54■□□□□ 0.56
SNCA-209ENST00000506244 DACT1Q9NYF0 836 aa18.54■□□□□ 0.56
SNCA-209ENST00000506244 LRFN2Q9ULH4 789 aa18.54■□□□□ 0.56
SNCA-209ENST00000506244 MORC2Q9Y6X9 1032 aaPredicted RBP18.54■□□□□ 0.56
SNCA-209ENST00000506244 MYH15Q9Y2K3 1946 aa18.53■□□□□ 0.56
SNCA-209ENST00000506244 ZSCAN22P10073 491 aaPredicted RBP18.53■□□□□ 0.56
SNCA-209ENST00000506244 UBA7P41226 1012 aa18.53■□□□□ 0.56
SNCA-209ENST00000506244 SARSP49591 514 aaKnown RBP18.53■□□□□ 0.56
SNCA-209ENST00000506244 TTC3P53804 2025 aa18.53■□□□□ 0.56
SNCA-209ENST00000506244 POU5F1BQ06416 359 aa18.53■□□□□ 0.56
SNCA-209ENST00000506244 HYIQ5T013 277 aa18.53■□□□□ 0.56
SNCA-209ENST00000506244 PADI6Q6TGC4 694 aa18.53■□□□□ 0.56
SNCA-209ENST00000506244 SLC24A5Q71RS6 500 aa18.53■□□□□ 0.56
SNCA-209ENST00000506244 CATSPER4Q7RTX7 472 aa18.53■□□□□ 0.56
SNCA-209ENST00000506244 RNF149Q8NC42 400 aa18.53■□□□□ 0.56
SNCA-209ENST00000506244 CALML4Q96GE6 196 aa18.53■□□□□ 0.56
SNCA-209ENST00000506244 POLR3FQ9H1D9 316 aaPredicted RBP18.53■□□□□ 0.56
SNCA-209ENST00000506244 CHST12Q9NRB3 414 aa18.53■□□□□ 0.56
SNCA-209ENST00000506244 RGS18Q9NS28 235 aa18.53■□□□□ 0.56
SNCA-209ENST00000506244 EYA4O95677 639 aa18.52■□□□□ 0.56
SNCA-209ENST00000506244 SRGAP2CP0DJJ0 459 aa18.52■□□□□ 0.56
SNCA-209ENST00000506244 CDC25AP30304 524 aa18.52■□□□□ 0.56
SNCA-209ENST00000506244 ARL2P36404 184 aa18.52■□□□□ 0.56
SNCA-209ENST00000506244 ZRSR1Q15695 479 aaKnown RBP18.52■□□□□ 0.56
SNCA-209ENST00000506244 CABP7Q86V35 215 aa18.52■□□□□ 0.56
SNCA-209ENST00000506244 KSR1Q8IVT5 923 aa18.52■□□□□ 0.56
SNCA-209ENST00000506244 SPRYD3Q8NCJ5 442 aa18.52■□□□□ 0.56
SNCA-209ENST00000506244 RASSF8Q8NHQ8 419 aa18.52■□□□□ 0.56
SNCA-209ENST00000506244 SP7Q8TDD2 431 aaPredicted RBP18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms