RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 SPOPLQ6IQ16 392 aa14.08□□□□□ -0.15
PTPRF-215ENST00000496447 POTEBQ6S5H4 581 aa14.08□□□□□ -0.15
PTPRF-215ENST00000496447 MB21D1Q8N884 522 aa14.08□□□□□ -0.15
PTPRF-215ENST00000496447 TMEM35BQ8NCS4 154 aa14.08□□□□□ -0.15
PTPRF-215ENST00000496447 HVCN1Q96D96 273 aa14.08□□□□□ -0.15
PTPRF-215ENST00000496447 LRGUKQ96M69 825 aa14.08□□□□□ -0.15
PTPRF-215ENST00000496447 ADAM22Q9P0K1 906 aa14.08□□□□□ -0.15
PTPRF-215ENST00000496447 TULP4Q9NRJ4 1543 aa14.08□□□□□ -0.15
PTPRF-215ENST00000496447 WDR19Q8NEZ3 1342 aa14.08□□□□□ -0.15
PTPRF-215ENST00000496447 GCLMP48507 274 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 MXD3Q9BW11 206 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 PRDM5Q9NQX1 630 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-215ENST00000496447 MOSPD1Q9UJG1 213 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 ATP8A1Q9Y2Q0 1164 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 ALKQ9UM73 1620 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 ADCY1Q08828 1119 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 TAF1CQ15572 869 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-215ENST00000496447 HSP90AA5PQ58FG0 334 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 ALKBH5Q6P6C2 394 aaKnown RBP14.08□□□□□ -0.16
PTPRF-215ENST00000496447 GJB4Q9NTQ9 266 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 HACL1Q9UJ83 578 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 PDE1CQ14123 709 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-215ENST00000496447 KRT31Q15323 416 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 ALX1Q15699 326 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 LRRC31Q6UY01 552 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 TOGARAM2Q6ZUX3 1019 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 RHOT2Q8IXI1 618 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 TSC22D3Q99576 134 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 TMEM106CQ9BVX2 250 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 MRPL4Q9BYD3 311 aaKnown RBP14.08□□□□□ -0.16
PTPRF-215ENST00000496447 BARHL2Q9NY43 387 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 RWDD2BP57060 319 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 TOB2Q14106 344 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-215ENST00000496447 SMIM5Q71RC9 77 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 HOMEZQ8IX15 550 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 DEPDC1BQ8WUY9 529 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 LXNQ9BS40 222 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 MTA3Q9BTC8 594 aa14.08□□□□□ -0.16
PTPRF-215ENST00000496447 MT-ND3P03897 115 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 BBS9Q3SYG4 887 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 STRIP1Q5VSL9 837 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 TMEM270Q6UE05 265 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 LDHDQ86WU2 507 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 VSTM4Q8IW00 320 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 CFAP61Q8NHU2 1237 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 AFG1LQ8WV93 481 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 YY1AP1Q9H869 796 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 INTS9Q9NV88 658 aaKnown RBP14.07□□□□□ -0.16
PTPRF-215ENST00000496447 RNF14Q9UBS8 474 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 FIS1Q9Y3D6 152 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 GSG1L2A8MUP6 293 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 NVLO15381 856 aaKnown RBP14.07□□□□□ -0.16
PTPRF-215ENST00000496447 BAG2O95816 211 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 C2orf54Q08AI8 447 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 ORC2Q13416 577 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-215ENST00000496447 ADAM21Q9UKJ8 722 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 HPCAL4Q9UM19 191 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 FOXO4P98177 505 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 COASYQ13057 564 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 SKIV2LQ15477 1246 aaKnown RBP14.07□□□□□ -0.16
PTPRF-215ENST00000496447 MB21D2Q8IYB1 491 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-215ENST00000496447 CCDC197Q8NCU1 140 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 NEDD1Q8NHV4 660 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 OXER1Q8TDS5 423 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 TSPYL2Q9H2G4 693 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-215ENST00000496447 THEGQ9P2T0 379 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 SUFUQ9UMX1 484 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 FAF1Q9UNN5 650 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-215ENST00000496447 NDUFA10O95299 355 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 TTC4O95801 387 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 SLC10A5Q5PT55 438 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 ADAMTS1Q9UHI8 967 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 NBPF26B4DH59 902 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 IFNAR2P48551 515 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 EPHB4P54760 987 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 COG7P83436 770 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 NBPF10Q6P3W6 841 aaKnown RBP14.07□□□□□ -0.16
PTPRF-215ENST00000496447 KCNV1Q6PIU1 500 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 NBPF15Q8N660 670 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 ARMC2Q8NEN0 867 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 OR6J1Q8NGC5 347 aa14.07□□□□□ -0.16
PTPRF-215ENST00000496447 DHX38Q92620 1227 aaKnown RBP14.07□□□□□ -0.16
PTPRF-215ENST00000496447 POTEFA5A3E0 1075 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 POTEIP0CG38 1075 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 GUCY2CP25092 1073 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 ZNF157P51786 506 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-215ENST00000496447 CYP27A1Q02318 531 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 KCTD16Q68DU8 428 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 POTEGQ6S5H5 508 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 POTEEQ6S8J3 1075 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 PASD1Q8IV76 773 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 ALKBH8Q96BT7 664 aaKnown RBP14.06□□□□□ -0.16
PTPRF-215ENST00000496447 ZMAT2Q96NC0 199 aaKnown RBP14.06□□□□□ -0.16
PTPRF-215ENST00000496447 PARD6BQ9BYG5 372 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 SLC24A3Q9HC58 644 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 POLD4Q9HCU8 107 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 SLC9A2Q9UBY0 812 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 PRR5LQ6MZQ0 368 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 CXorf56Q9H5V9 222 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 ASNSD1Q9NWL6 643 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms