RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 ENPP3O14638 875 aa18.24■□□□□ 0.51
SF3A1-209ENST00000496189 ASAP2O43150 1006 aa18.24■□□□□ 0.51
SF3A1-209ENST00000496189 MYOGP15173 224 aa18.24■□□□□ 0.51
SF3A1-209ENST00000496189 SFPQP23246 707 aaKnown RBP eCLIP18.24■□□□□ 0.51
SF3A1-209ENST00000496189 ATP2C1P98194 919 aaPredicted RBP18.24■□□□□ 0.51
SF3A1-209ENST00000496189 ARL6IP4Q66PJ3 421 aaKnown RBP18.24■□□□□ 0.51
SF3A1-209ENST00000496189 CATSPER3Q86XQ3 398 aa18.24■□□□□ 0.51
SF3A1-209ENST00000496189 C4orf32Q8N8J7 132 aa18.24■□□□□ 0.51
SF3A1-209ENST00000496189 SNX29Q8TEQ0 813 aa18.24■□□□□ 0.51
SF3A1-209ENST00000496189 NLRP4Q96MN2 994 aa18.24■□□□□ 0.51
SF3A1-209ENST00000496189 OSBPL7Q9BZF2 842 aa18.24■□□□□ 0.51
SF3A1-209ENST00000496189 CDHR5Q9HBB8 845 aa18.24■□□□□ 0.51
SF3A1-209ENST00000496189 C1orf112Q9NSG2 853 aa18.24■□□□□ 0.51
SF3A1-209ENST00000496189 COL4A3BPQ9Y5P4 624 aa18.24■□□□□ 0.51
SF3A1-209ENST00000496189 GBF1Q92538 1859 aa18.24■□□□□ 0.51
SF3A1-209ENST00000496189 DARSP14868 501 aaKnown RBP18.23■□□□□ 0.51
SF3A1-209ENST00000496189 FOSL2P15408 326 aa18.23■□□□□ 0.51
SF3A1-209ENST00000496189 TFDP1Q14186 410 aa18.23■□□□□ 0.51
SF3A1-209ENST00000496189 MXD4Q14582 209 aaPredicted RBP18.23■□□□□ 0.51
SF3A1-209ENST00000496189 TMCO2Q7Z6W1 182 aaPredicted RBP18.23■□□□□ 0.51
SF3A1-209ENST00000496189 IGSF22Q8N9C0 903 aa18.23■□□□□ 0.51
SF3A1-209ENST00000496189 PIGOQ8TEQ8 1089 aa18.23■□□□□ 0.51
SF3A1-209ENST00000496189 CEP89Q96ST8 783 aa18.23■□□□□ 0.51
SF3A1-209ENST00000496189 CDX2Q99626 313 aaPredicted RBP18.23■□□□□ 0.51
SF3A1-209ENST00000496189 TSPYL2Q9H2G4 693 aaPredicted RBP18.23■□□□□ 0.51
SF3A1-209ENST00000496189 ADAMTS10Q9H324 1103 aa18.23■□□□□ 0.51
SF3A1-209ENST00000496189 ERVK-5Q9HDB9 667 aa18.23■□□□□ 0.51
SF3A1-209ENST00000496189 BMP2KQ9NSY1 1161 aaPredicted RBP18.23■□□□□ 0.51
SF3A1-209ENST00000496189 DBR1Q9UK59 544 aaKnown RBP18.23■□□□□ 0.51
SF3A1-209ENST00000496189 STXBP5LQ9Y2K9 1186 aa18.23■□□□□ 0.51
SF3A1-209ENST00000496189 LAMA2P24043 3122 aaKnown RBP18.23■□□□□ 0.51
SF3A1-209ENST00000496189 A0A087WZ62 844 aa18.22■□□□□ 0.51
SF3A1-209ENST00000496189 ARHGEF35A5YM69 484 aa18.22■□□□□ 0.51
SF3A1-209ENST00000496189 MED24O75448 989 aa18.22■□□□□ 0.51
SF3A1-209ENST00000496189 SPATA31C1P0DKV0 1188 aa18.22■□□□□ 0.51
SF3A1-209ENST00000496189 ZSCAN22P10073 491 aaPredicted RBP18.22■□□□□ 0.51
SF3A1-209ENST00000496189 IBSPP21815 317 aaPredicted RBP18.22■□□□□ 0.51
SF3A1-209ENST00000496189 RARRES1P49788 294 aa18.22■□□□□ 0.51
SF3A1-209ENST00000496189 RESTQ13127 1097 aa18.22■□□□□ 0.51
SF3A1-209ENST00000496189 MKRN4PQ13434 485 aaPredicted RBP18.22■□□□□ 0.51
SF3A1-209ENST00000496189 POTEGQ6S5H5 508 aa18.22■□□□□ 0.51
SF3A1-209ENST00000496189 FAM228AQ86W67 206 aa18.22■□□□□ 0.51
SF3A1-209ENST00000496189 NPAS4Q8IUM7 802 aa18.22■□□□□ 0.51
SF3A1-209ENST00000496189 MCPH1Q8NEM0 835 aa18.22■□□□□ 0.51
SF3A1-209ENST00000496189 TMEM40Q8WWA1 233 aa18.22■□□□□ 0.51
SF3A1-209ENST00000496189 PRPF31Q8WWY3 499 aaKnown RBP18.22■□□□□ 0.51
SF3A1-209ENST00000496189 TMEM143Q96AN5 459 aa18.22■□□□□ 0.51
SF3A1-209ENST00000496189 CDK5RAP3Q96JB5 506 aa18.22■□□□□ 0.51
SF3A1-209ENST00000496189 ZNF668Q96K58 619 aaPredicted RBP18.22■□□□□ 0.51
SF3A1-209ENST00000496189 GUCD1Q96NT3 240 aa18.22■□□□□ 0.51
SF3A1-209ENST00000496189 ADAM2Q99965 735 aa18.22■□□□□ 0.51
SF3A1-209ENST00000496189 FDXACB1Q9BRP7 624 aaPredicted RBP18.22■□□□□ 0.51
SF3A1-209ENST00000496189 VWA3AA6NCI4 1184 aa18.21■□□□□ 0.51
SF3A1-209ENST00000496189 ZBTB39O15060 712 aa18.21■□□□□ 0.51
SF3A1-209ENST00000496189 USO1O60763 962 aaKnown RBP18.21■□□□□ 0.51
SF3A1-209ENST00000496189 HTRA4P83105 476 aaPredicted RBP18.21■□□□□ 0.51
SF3A1-209ENST00000496189 DRP2Q13474 957 aa18.21■□□□□ 0.51
SF3A1-209ENST00000496189 GRIN2CQ14957 1233 aa18.21■□□□□ 0.51
SF3A1-209ENST00000496189 SLC24A5Q71RS6 500 aa18.21■□□□□ 0.51
SF3A1-209ENST00000496189 ZNF579Q8NAF0 562 aaKnown RBP18.21■□□□□ 0.51
SF3A1-209ENST00000496189 MYLIPQ8WY64 445 aa18.21■□□□□ 0.51
SF3A1-209ENST00000496189 TGS1Q96RS0 853 aaKnown RBP18.21■□□□□ 0.51
SF3A1-209ENST00000496189 NT5C3AQ9H0P0 336 aa18.21■□□□□ 0.51
SF3A1-209ENST00000496189 PRDM12Q9H4Q4 367 aa18.21■□□□□ 0.51
SF3A1-209ENST00000496189 DACT1Q9NYF0 836 aa18.21■□□□□ 0.51
SF3A1-209ENST00000496189 PCDHB7Q9Y5E2 793 aa18.21■□□□□ 0.51
SF3A1-209ENST00000496189 LOXHD1Q8IVV2 1947 aa18.21■□□□□ 0.51
SF3A1-209ENST00000496189 SZT2Q5T011 3432 aa18.21■□□□□ 0.51
SF3A1-209ENST00000496189 SRGAP2CP0DJJ0 459 aa18.2■□□□□ 0.5
SF3A1-209ENST00000496189 PHKA2P46019 1235 aa18.2■□□□□ 0.5
SF3A1-209ENST00000496189 SARSP49591 514 aaKnown RBP18.2■□□□□ 0.5
SF3A1-209ENST00000496189 TAP1Q03518 808 aa18.2■□□□□ 0.5
SF3A1-209ENST00000496189 NCBP1Q09161 790 aaKnown RBP18.2■□□□□ 0.5
SF3A1-209ENST00000496189 LAMTOR4Q0VGL1 99 aa18.2■□□□□ 0.5
SF3A1-209ENST00000496189 CATSPER4Q7RTX7 472 aa18.2■□□□□ 0.5
SF3A1-209ENST00000496189 SRGAP1Q7Z6B7 1085 aa18.2■□□□□ 0.5
SF3A1-209ENST00000496189 FIBCD1Q8N539 461 aa18.2■□□□□ 0.5
SF3A1-209ENST00000496189 AK8Q96MA6 479 aa18.2■□□□□ 0.5
SF3A1-209ENST00000496189 ZNF396Q96N95 335 aaPredicted RBP18.2■□□□□ 0.5
SF3A1-209ENST00000496189 SAMD11Q96NU1 681 aa18.2■□□□□ 0.5
SF3A1-209ENST00000496189 RGS18Q9NS28 235 aa18.2■□□□□ 0.5
SF3A1-209ENST00000496189 KIAA1024Q9UPX6 916 aa18.2■□□□□ 0.5
SF3A1-209ENST00000496189 DNM3Q9UQ16 869 aa18.2■□□□□ 0.5
SF3A1-209ENST00000496189 RWDD3Q9Y3V2 267 aa18.2■□□□□ 0.5
SF3A1-209ENST00000496189 ARID2Q68CP9 1835 aa18.2■□□□□ 0.5
SF3A1-209ENST00000496189 LINC01553A4QN01 128 aa18.19■□□□□ 0.5
SF3A1-209ENST00000496189 GTPBP6O43824 516 aaPredicted RBP18.19■□□□□ 0.5
SF3A1-209ENST00000496189 SF3A1Q15459 793 aaKnown RBP18.19■□□□□ 0.5
SF3A1-209ENST00000496189 ZRSR1Q15695 479 aaKnown RBP18.19■□□□□ 0.5
SF3A1-209ENST00000496189 KCTD17Q8N5Z5 321 aa18.19■□□□□ 0.5
SF3A1-209ENST00000496189 RNF149Q8NC42 400 aa18.19■□□□□ 0.5
SF3A1-209ENST00000496189 RASSF8Q8NHQ8 419 aa18.19■□□□□ 0.5
SF3A1-209ENST00000496189 ARNTL2Q8WYA1 636 aa18.19■□□□□ 0.5
SF3A1-209ENST00000496189 TMX1Q9H3N1 280 aa18.19■□□□□ 0.5
SF3A1-209ENST00000496189 CHST12Q9NRB3 414 aa18.19■□□□□ 0.5
SF3A1-209ENST00000496189 DDX19AQ9NUU7 478 aaKnown RBP18.19■□□□□ 0.5
SF3A1-209ENST00000496189 PTPRSQ13332 1948 aa18.19■□□□□ 0.5
SF3A1-209ENST00000496189 ADGRA3Q8IWK6 1321 aa18.19■□□□□ 0.5
SF3A1-209ENST00000496189 LCHNA4D1U4 455 aa18.18■□□□□ 0.5
SF3A1-209ENST00000496189 HOXA2O43364 376 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms