RNA–Protein interactions for RNA: ENST00000496144.5

VPS13B-206, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 5

Gene VPS13B, Length 5,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-206ENST00000496144 TRPV1Q8NER1 839 aa9.42□□□□□ -0.9
VPS13B-206ENST00000496144 ENOX1Q8TC92 643 aaKnown RBP9.42□□□□□ -0.9
VPS13B-206ENST00000496144 LRCH3Q96II8 777 aa9.42□□□□□ -0.9
VPS13B-206ENST00000496144 HDAC6Q9UBN7 1215 aa9.42□□□□□ -0.9
VPS13B-206ENST00000496144 VWA3AA6NCI4 1184 aa9.42□□□□□ -0.9
VPS13B-206ENST00000496144 ZNF18P17022 549 aa9.42□□□□□ -0.9
VPS13B-206ENST00000496144 TPD52L1Q16890 204 aaPredicted RBP9.42□□□□□ -0.9
VPS13B-206ENST00000496144 CATSPER4Q7RTX7 472 aa9.42□□□□□ -0.9
VPS13B-206ENST00000496144 NOC4LQ9BVI4 516 aaKnown RBP9.42□□□□□ -0.9
VPS13B-206ENST00000496144 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.42□□□□□ -0.9
VPS13B-206ENST00000496144 COL6A1P12109 1028 aa9.42□□□□□ -0.9
VPS13B-206ENST00000496144 UBASH3AP57075 661 aa9.42□□□□□ -0.9
VPS13B-206ENST00000496144 FAAP100Q0VG06 881 aa9.42□□□□□ -0.9
VPS13B-206ENST00000496144 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.42□□□□□ -0.92e-6■■□□□ 13.6
VPS13B-206ENST00000496144 FANCLQ9NW38 375 aa9.42□□□□□ -0.9
VPS13B-206ENST00000496144 USP27XA6NNY8 438 aa9.42□□□□□ -0.9
VPS13B-206ENST00000496144 GCFC2P16383 781 aaKnown RBP9.42□□□□□ -0.9
VPS13B-206ENST00000496144 MRPS6P82932 125 aaKnown RBP9.42□□□□□ -0.9
VPS13B-206ENST00000496144 TYW1BQ6NUM6 668 aa9.42□□□□□ -0.9
VPS13B-206ENST00000496144 ELMOD1Q8N336 334 aa9.42□□□□□ -0.9
VPS13B-206ENST00000496144 EMILIN2Q9BXX0 1053 aa9.42□□□□□ -0.9
VPS13B-206ENST00000496144 ARHGEF37A1IGU5 675 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 LAD1O00515 517 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 HAUS3Q68CZ6 603 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 NYAP1Q6ZVC0 841 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 RASGRP2Q7LDG7 609 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 HERC6Q8IVU3 1022 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 ATXN2LQ8WWM7 1075 aaKnown RBP9.41□□□□□ -0.9
VPS13B-206ENST00000496144 UHRF1Q96T88 793 aaPredicted RBP9.41□□□□□ -0.9
VPS13B-206ENST00000496144 SERPINC1P01008 464 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 ERCC5P28715 1186 aaPredicted RBP9.41□□□□□ -0.9
VPS13B-206ENST00000496144 ALDH7A1P49419 539 aaKnown RBP9.41□□□□□ -0.9
VPS13B-206ENST00000496144 YARSP54577 528 aaKnown RBP9.41□□□□□ -0.9
VPS13B-206ENST00000496144 UBE2SQ16763 222 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 FILIP1Q7Z7B0 1213 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 EXOC4Q96A65 974 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 GTF2IRD1Q9UHL9 959 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 PHKA2P46019 1235 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 TWF2Q6IBS0 349 aaKnown RBP9.41□□□□□ -0.9
VPS13B-206ENST00000496144 RSPH1Q8WYR4 309 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 TMEM169Q96HH4 297 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 TMX1Q9H3N1 280 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 EP400Q96L91 3159 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 ADAMTS4O75173 837 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 LAG3P18627 525 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 TBX2Q13207 712 aaPredicted RBP9.41□□□□□ -0.9
VPS13B-206ENST00000496144 GLB1LQ6UWU2 654 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.41□□□□□ -0.9
VPS13B-206ENST00000496144 PDILTQ8N807 584 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 BICD1Q96G01 975 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 SENP7Q9BQF6 1050 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 MXRA8Q9BRK3 442 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 ZMYND12Q9H0C1 365 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 NR2E1Q9Y466 385 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 PHIPQ8WWQ0 1821 aa9.41□□□□□ -0.9
VPS13B-206ENST00000496144 DNAJC25-GNG10A0A024R161 153 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 RAB27AP51159 221 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 CUL4BQ13620 913 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 PPP2R5AQ15172 486 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 Q7L0L9 218 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 GSDMAQ96QA5 445 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 SETD4Q9NVD3 440 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 INTS13Q9NVM9 706 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 TBKBP1A7MCY6 615 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 PPP1R3GB7ZBB8 358 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 SSBP05455 408 aaKnown RBP eCLIP9.4□□□□□ -0.9
VPS13B-206ENST00000496144 ALADP13716 330 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 CD44P16070 742 aaKnown RBP9.4□□□□□ -0.9
VPS13B-206ENST00000496144 KIAA1755Q5JYT7 1200 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 NCAPH2Q6IBW4 605 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 CCAR2Q8N163 923 aaKnown RBP9.4□□□□□ -0.9
VPS13B-206ENST00000496144 RDM1Q8NG50 284 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 PAXBP1Q9Y5B6 917 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 IQCF3P0C7M6 154 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 AFMP43652 599 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 COPS5Q92905 334 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 CPVLQ9H3G5 476 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 DDX41Q9UJV9 622 aaKnown RBP9.4□□□□□ -0.9
VPS13B-206ENST00000496144 PCDHA10Q9Y5I2 948 aa9.4□□□□□ -0.9
VPS13B-206ENST00000496144 RIOK3O14730 519 aaKnown RBP9.4□□□□□ -0.91
VPS13B-206ENST00000496144 LETM2Q2VYF4 491 aa9.4□□□□□ -0.91
VPS13B-206ENST00000496144 XKR9Q5GH70 373 aa9.4□□□□□ -0.91
VPS13B-206ENST00000496144 PDE12Q6L8Q7 609 aaKnown RBP9.4□□□□□ -0.91
VPS13B-206ENST00000496144 FAM126BQ8IXS8 530 aa9.4□□□□□ -0.91
VPS13B-206ENST00000496144 RASGRP4Q8TDF6 673 aa9.4□□□□□ -0.91
VPS13B-206ENST00000496144 MED15Q96RN5 788 aa9.4□□□□□ -0.91
VPS13B-206ENST00000496144 TNNT1P13805 278 aa9.4□□□□□ -0.91
VPS13B-206ENST00000496144 CREMQ03060 361 aa9.4□□□□□ -0.91
VPS13B-206ENST00000496144 PAN2Q504Q3 1202 aaKnown RBP9.4□□□□□ -0.91
VPS13B-206ENST00000496144 CEP55Q53EZ4 464 aa9.4□□□□□ -0.91
VPS13B-206ENST00000496144 CEP135Q66GS9 1140 aa9.4□□□□□ -0.91
VPS13B-206ENST00000496144 REPS2Q8NFH8 660 aa9.4□□□□□ -0.91
VPS13B-206ENST00000496144 BBXQ8WY36 941 aaPredicted RBP9.4□□□□□ -0.91
VPS13B-206ENST00000496144 C16orf45Q96MC5 204 aaPredicted RBP9.4□□□□□ -0.91
VPS13B-206ENST00000496144 JADE2Q9NQC1 790 aa9.4□□□□□ -0.91
VPS13B-206ENST00000496144 DDX25Q9UHL0 483 aaKnown RBP9.4□□□□□ -0.91
VPS13B-206ENST00000496144 FBXL21Q9UKT6 434 aa9.4□□□□□ -0.91
VPS13B-206ENST00000496144 PPME1Q9Y570 386 aa9.4□□□□□ -0.91
VPS13B-206ENST00000496144 RB1P06400 928 aa9.39□□□□□ -0.91
VPS13B-206ENST00000496144 SNHG28P0DPA3 235 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms