RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 RALGAPA2Q2PPJ7 1873 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 TRIP11Q15643 1979 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 TRIM49BA6NDI0 452 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 SFI1A8K8P3 1242 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 GOLGA6L19H0YKK7 550 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 H3BRB1 525 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 HAS3O00219 553 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 GAS2O43903 313 aaKnown RBP13.98□□□□□ -0.17
VPS52-220ENST00000493674 MYBP10242 640 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 MARK3P27448 753 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 ARL2P36404 184 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 LRRC63Q05C16 580 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 ALCAMQ13740 583 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 LRRC41Q15345 812 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 ZNF720Q7Z2F6 126 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 FAM178BQ8IXR5 827 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 EXOC8Q8IYI6 725 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 MYCT1Q8N699 235 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 LINC01465Q8N7H1 131 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 SLAIN1Q8ND83 568 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 BSNDQ8WZ55 320 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 ABHD8Q96I13 439 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 NTPCRQ9BSD7 190 aaKnown RBP13.98□□□□□ -0.17
VPS52-220ENST00000493674 TUT1Q9H6E5 874 aaKnown RBP13.98□□□□□ -0.17
VPS52-220ENST00000493674 TBC1D7Q9P0N9 293 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 LARSQ9P2J5 1176 aaKnown RBP13.98□□□□□ -0.17
VPS52-220ENST00000493674 NFE2L3Q9Y4A8 694 aa13.98□□□□□ -0.17
VPS52-220ENST00000493674 BICDL2A1A5D9 508 aa13.97□□□□□ -0.17
VPS52-220ENST00000493674 ADAMTS4O75173 837 aa13.97□□□□□ -0.17
VPS52-220ENST00000493674 KIF20AO95235 890 aa13.97□□□□□ -0.17
VPS52-220ENST00000493674 C22orf31O95567 290 aa13.97□□□□□ -0.17
VPS52-220ENST00000493674 CCND3P30281 292 aaPredicted RBP13.97□□□□□ -0.17
VPS52-220ENST00000493674 NMT1P30419 496 aaKnown RBP13.97□□□□□ -0.17
VPS52-220ENST00000493674 POLGP54098 1239 aaPredicted RBP13.97□□□□□ -0.17
VPS52-220ENST00000493674 STX17P56962 302 aa13.97□□□□□ -0.17
VPS52-220ENST00000493674 IRX5P78411 483 aaPredicted RBP13.97□□□□□ -0.17
VPS52-220ENST00000493674 MKRN4PQ13434 485 aaPredicted RBP13.97□□□□□ -0.17
VPS52-220ENST00000493674 FSCN1Q16658 493 aaKnown RBP13.97□□□□□ -0.17
VPS52-220ENST00000493674 ODR4Q5SWX8 454 aa13.97□□□□□ -0.17
VPS52-220ENST00000493674 FAM102BQ5T8I3 360 aa13.97□□□□□ -0.17
VPS52-220ENST00000493674 ANKRD40Q6AI12 368 aa13.97□□□□□ -0.17
VPS52-220ENST00000493674 TRMT1LQ7Z2T5 733 aaKnown RBP13.97□□□□□ -0.17
VPS52-220ENST00000493674 IRF2BP1Q8IU81 584 aa13.97□□□□□ -0.17
VPS52-220ENST00000493674 SLC17A8Q8NDX2 589 aa13.97□□□□□ -0.17
VPS52-220ENST00000493674 SLC7A3Q8WY07 619 aa13.97□□□□□ -0.17
VPS52-220ENST00000493674 HVCN1Q96D96 273 aa13.97□□□□□ -0.17
VPS52-220ENST00000493674 AP5M1Q9H0R1 490 aa13.97□□□□□ -0.17
VPS52-220ENST00000493674 POLR3FQ9H1D9 316 aaPredicted RBP13.97□□□□□ -0.17
VPS52-220ENST00000493674 ZHX3Q9H4I2 956 aa13.97□□□□□ -0.17
VPS52-220ENST00000493674 MRPL44Q9H9J2 332 aaKnown RBP13.97□□□□□ -0.17
VPS52-220ENST00000493674 FANCLQ9NW38 375 aa13.97□□□□□ -0.17
VPS52-220ENST00000493674 KIAA0100Q14667 2235 aaKnown RBP13.96□□□□□ -0.17
VPS52-220ENST00000493674 ADGRA3Q8IWK6 1321 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 MYADML2A6NDP7 307 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 KPNA6O60684 536 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 INSRRP14616 1297 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 SCP2P22307 547 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 CST5P28325 142 aaPredicted RBP13.96□□□□□ -0.17
VPS52-220ENST00000493674 HOXC8P31273 242 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 NPTX2P47972 431 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 SOX10P56693 466 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 GTF2BQ00403 316 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 PURAQ00577 322 aaKnown RBP13.96□□□□□ -0.17
VPS52-220ENST00000493674 TBC1D8BQ0IIM8 1120 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 NFIL3Q16649 462 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 PPP4R3CPQ6ZMV5 832 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 LRRC55Q6ZSA7 311 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 MAEAQ7L5Y9 396 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 APTXQ7Z2E3 356 aaKnown RBP13.96□□□□□ -0.17
VPS52-220ENST00000493674 KLHDC9Q8NEP7 349 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 RAET1EQ8TD07 263 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 ASAP3Q8TDY4 903 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 NOC3LQ8WTT2 800 aaKnown RBP13.96□□□□□ -0.17
VPS52-220ENST00000493674 TMEM174Q8WUU8 243 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 PDLIM2Q96JY6 352 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 JPH2Q9BR39 696 aaPredicted RBP13.96□□□□□ -0.17
VPS52-220ENST00000493674 THAP9Q9H5L6 903 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 SAMSN1Q9NSI8 373 aaKnown RBP13.96□□□□□ -0.17
VPS52-220ENST00000493674 ARHGAP28Q9P2N2 729 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 TRPC6Q9Y210 931 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 TRAF3IP3Q9Y228 551 aa13.96□□□□□ -0.17
VPS52-220ENST00000493674 PDXKO00764 312 aa13.95□□□□□ -0.18
VPS52-220ENST00000493674 PRPF6O94906 941 aaKnown RBP13.95□□□□□ -0.18
VPS52-220ENST00000493674 GCNT3O95395 438 aa13.95□□□□□ -0.18
VPS52-220ENST00000493674 RARBP10826 455 aa13.95□□□□□ -0.18
VPS52-220ENST00000493674 ATP1A3P13637 1013 aa13.95□□□□□ -0.18
VPS52-220ENST00000493674 GLRA2P23416 452 aa13.95□□□□□ -0.18
VPS52-220ENST00000493674 PEX3P56589 373 aa13.95□□□□□ -0.18
VPS52-220ENST00000493674 TPM4P67936 248 aa13.95□□□□□ -0.18
VPS52-220ENST00000493674 BEX3Q00994 111 aa13.95□□□□□ -0.18
VPS52-220ENST00000493674 DMP1Q13316 513 aaPredicted RBP13.95□□□□□ -0.18
VPS52-220ENST00000493674 KNOP1Q1ED39 458 aaKnown RBP13.95□□□□□ -0.18
VPS52-220ENST00000493674 EDRF1Q3B7T1 1238 aa13.95□□□□□ -0.18
VPS52-220ENST00000493674 BRDTQ58F21 947 aaPredicted RBP13.95□□□□□ -0.18
VPS52-220ENST00000493674 IER5Q5VY09 327 aa13.95□□□□□ -0.18
VPS52-220ENST00000493674 CCSAPQ6IQ19 270 aaPredicted RBP13.95□□□□□ -0.18
VPS52-220ENST00000493674 STXBP4Q6ZWJ1 553 aa13.95□□□□□ -0.18
VPS52-220ENST00000493674 TMEM161BQ8NDZ6 487 aa13.95□□□□□ -0.18
VPS52-220ENST00000493674 TRAPPC12Q8WVT3 735 aa13.95□□□□□ -0.18
VPS52-220ENST00000493674 TCP11Q8WWU5 503 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms