RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 LBHD1Q9BQE6 289 aaPredicted RBP12.64□□□□□ -0.39
HDAC4-210ENST00000493582 TRIM4Q9C037 500 aa12.64□□□□□ -0.39
HDAC4-210ENST00000493582 CNOT7Q9UIV1 285 aaKnown RBP12.64□□□□□ -0.39
HDAC4-210ENST00000493582 HAO1Q9UJM8 370 aa12.64□□□□□ -0.39
HDAC4-210ENST00000493582 GOLGA8HP0CJ92 632 aa12.64□□□□□ -0.39
HDAC4-210ENST00000493582 UCHL3P15374 230 aa12.64□□□□□ -0.39
HDAC4-210ENST00000493582 TARSP26639 723 aaKnown RBP12.64□□□□□ -0.39
HDAC4-210ENST00000493582 CACNB1Q02641 598 aaPredicted RBP12.64□□□□□ -0.39
HDAC4-210ENST00000493582 DNAJC10Q8IXB1 793 aa12.64□□□□□ -0.39
HDAC4-210ENST00000493582 PROM2Q8N271 834 aa12.64□□□□□ -0.39
HDAC4-210ENST00000493582 FAM13CQ8NE31 585 aa12.64□□□□□ -0.39
HDAC4-210ENST00000493582 TTC8Q8TAM2 541 aa12.64□□□□□ -0.39
HDAC4-210ENST00000493582 GORASP1Q9BQQ3 440 aa12.64□□□□□ -0.39
HDAC4-210ENST00000493582 CTNNAL1Q9UBT7 734 aa12.64□□□□□ -0.39
HDAC4-210ENST00000493582 O00370 1275 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 ENTPD5O75356 428 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 ABCB4P21439 1286 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 SESN3P58005 492 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 TNFAIP8L3Q5GJ75 292 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 VSTM1Q6UX27 236 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 FAM47EQ6ZV65 393 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 PNMA1Q8ND90 353 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 ANKRD27Q96NW4 1050 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 RAB3IPQ96QF0 476 aaPredicted RBP12.63□□□□□ -0.39
HDAC4-210ENST00000493582 PCMTD2Q9NV79 361 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 CYP39A1Q9NYL5 469 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.63□□□□□ -0.394e-7■■■■■ 41
HDAC4-210ENST00000493582 DUOX1Q9NRD9 1551 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 WFS1O76024 890 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 GALCP54803 685 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 MAPK7Q13164 816 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 LBRQ14739 615 aaKnown RBP12.63□□□□□ -0.39
HDAC4-210ENST00000493582 SEPT14Q6ZU15 432 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 VSIG1Q86XK7 387 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 SYCE1Q8N0S2 351 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 DNAJC9Q8WXX5 260 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 TGS1Q96RS0 853 aaKnown RBP12.63□□□□□ -0.39
HDAC4-210ENST00000493582 PPP1R12CQ9BZL4 782 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 BARHL2Q9NY43 387 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 TMOD4Q9NZQ9 345 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 LMCD1Q9NZU5 365 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 DDX3XO00571 662 aaKnown RBP eCLIP12.63□□□□□ -0.39
HDAC4-210ENST00000493582 ACSL3O95573 720 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 AFPP02771 609 aaKnown RBP12.63□□□□□ -0.39
HDAC4-210ENST00000493582 GJB7Q6PEY0 223 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 NBPF5PQ86XG9 351 aaPredicted RBP12.63□□□□□ -0.39
HDAC4-210ENST00000493582 SLC35G2Q8TBE7 412 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 TBCKQ8TEA7 893 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 ZFAND2BQ8WV99 257 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 BRIP1Q9BX63 1249 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 STMN4Q9H169 189 aaPredicted RBP12.63□□□□□ -0.39
HDAC4-210ENST00000493582 MYLK2Q9H1R3 596 aa12.63□□□□□ -0.39
HDAC4-210ENST00000493582 DDX3YO15523 660 aaKnown RBP12.62□□□□□ -0.39
HDAC4-210ENST00000493582 IGHMBP2P38935 993 aaKnown RBP12.62□□□□□ -0.39
HDAC4-210ENST00000493582 COASYQ13057 564 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 NONOQ15233 471 aaKnown RBP eCLIP12.62□□□□□ -0.391e-6■■■■□ 22.3
HDAC4-210ENST00000493582 FOXB2Q5VYV0 432 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 ARHGAP22Q7Z5H3 698 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 NEK8Q86SG6 692 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 ASAP3Q8TDY4 903 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 CKAP2Q8WWK9 683 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 ERP27Q96DN0 273 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 FAM210AQ96ND0 272 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 AJAP1Q9UKB5 411 aaPredicted RBP12.62□□□□□ -0.39
HDAC4-210ENST00000493582 NAPAP54920 295 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 TNIP1Q15025 636 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 SGSM1Q2NKQ1 1148 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 MUM1Q2TAK8 710 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 OR52E8Q6IFG1 317 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 ZNF384Q8TF68 577 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 ALG3Q92685 438 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 RAD54LQ92698 747 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 BIN2Q9UBW5 565 aaPredicted RBP12.62□□□□□ -0.39
HDAC4-210ENST00000493582 MAD2L2Q9UI95 211 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 PTPN22Q9Y2R2 807 aa12.62□□□□□ -0.39
HDAC4-210ENST00000493582 ANKRD63C9JTQ0 380 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 SMAPO00193 183 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 EPHB2P29323 1055 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 GYG1P46976 350 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 ECM1Q16610 540 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 FAM26FQ5R3K3 315 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 ZNF449Q6P9G9 518 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 BTNL9Q6UXG8 535 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 KSR1Q8IVT5 923 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 SNX29Q8TEQ0 813 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 DDX17Q92841 729 aaKnown RBP12.61□□□□□ -0.39
HDAC4-210ENST00000493582 GJA10Q969M2 543 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 UIMC1Q96RL1 719 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 IL17RBQ9NRM6 502 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 ARPP21Q9UBL0 812 aaPredicted RBP12.61□□□□□ -0.39
HDAC4-210ENST00000493582 STK17AQ9UEE5 414 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 MTRF1LQ9UGC7 380 aaKnown RBP12.61□□□□□ -0.39
HDAC4-210ENST00000493582 ARMCX3Q9UH62 379 aaPredicted RBP12.61□□□□□ -0.39
HDAC4-210ENST00000493582 TTC7AQ9ULT0 858 aaPredicted RBP12.61□□□□□ -0.39
HDAC4-210ENST00000493582 PFASO15067 1338 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 SMCO2A6NFE2 343 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 FAM187AA6NFU0 413 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 PTGIRP43119 386 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 CUL3Q13618 768 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 DPY19L2P1Q6NXN4 242 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms