RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 GSPT1P15170 499 aaKnown RBP14.03□□□□□ -0.16
COL6A3-212ENST00000491769 PADI6Q6TGC4 694 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 TBC1D19Q8N5T2 526 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 FBXO18Q8NFZ0 1043 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 HMBSP08397 361 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 DYDC2Q96IM9 177 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 RSPH10B2B2RC85 870 aa14.02□□□□□ -0.16
COL6A3-212ENST00000491769 RSPH10BP0C881 870 aa14.02□□□□□ -0.16
COL6A3-212ENST00000491769 CYP2D6P10635 497 aa14.02□□□□□ -0.16
COL6A3-212ENST00000491769 AP3B2Q13367 1082 aa14.02□□□□□ -0.16
COL6A3-212ENST00000491769 TBC1D22BQ9NU19 505 aa14.02□□□□□ -0.16
COL6A3-212ENST00000491769 GTPBP10A4D1E9 387 aaKnown RBP14.02□□□□□ -0.16
COL6A3-212ENST00000491769 HLA-DPA1P20036 260 aa14.02□□□□□ -0.16
COL6A3-212ENST00000491769 CYFIP1Q7L576 1253 aa14.02□□□□□ -0.16
COL6A3-212ENST00000491769 PIH1D3Q9NQM4 214 aaKnown RBP14.02□□□□□ -0.16
COL6A3-212ENST00000491769 PCDHA5Q9Y5H7 936 aa14.02□□□□□ -0.16
COL6A3-212ENST00000491769 PRPF3O43395 683 aaKnown RBP14.02□□□□□ -0.17
COL6A3-212ENST00000491769 PRAMEP78395 509 aa14.02□□□□□ -0.17
COL6A3-212ENST00000491769 RASGRF1Q13972 1273 aa14.02□□□□□ -0.17
COL6A3-212ENST00000491769 STAT3P40763 770 aa14.02□□□□□ -0.17
COL6A3-212ENST00000491769 EFHC2Q5JST6 749 aa14.02□□□□□ -0.17
COL6A3-212ENST00000491769 ANKRD40Q6AI12 368 aa14.02□□□□□ -0.17
COL6A3-212ENST00000491769 SLC35F6Q8N357 371 aa14.02□□□□□ -0.17
COL6A3-212ENST00000491769 PIP4K2CQ8TBX8 421 aa14.02□□□□□ -0.17
COL6A3-212ENST00000491769 SELENONQ9NZV5 590 aa14.02□□□□□ -0.17
COL6A3-212ENST00000491769 MAP10Q9P2G4 905 aa14.02□□□□□ -0.17
COL6A3-212ENST00000491769 SH2B2O14492 632 aaPredicted RBP14.02□□□□□ -0.17
COL6A3-212ENST00000491769 SERPING1P05155 500 aa14.02□□□□□ -0.17
COL6A3-212ENST00000491769 HMGCS2P54868 508 aa14.02□□□□□ -0.17
COL6A3-212ENST00000491769 KDELC2Q7Z4H8 507 aa14.02□□□□□ -0.17
COL6A3-212ENST00000491769 RNF135Q8IUD6 432 aa14.02□□□□□ -0.17
COL6A3-212ENST00000491769 MRPL4Q9BYD3 311 aaKnown RBP14.02□□□□□ -0.17
COL6A3-212ENST00000491769 UPF3AQ9H1J1 476 aaKnown RBP14.02□□□□□ -0.17
COL6A3-212ENST00000491769 ZSWIM5Q9P217 1185 aa14.02□□□□□ -0.17
COL6A3-212ENST00000491769 KIF17Q9P2E2 1029 aa14.02□□□□□ -0.17
COL6A3-212ENST00000491769 PACSIN2Q9UNF0 486 aaPredicted RBP14.02□□□□□ -0.17
COL6A3-212ENST00000491769 USP17L15C9J2P7 530 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 USP17L13C9JLJ4 530 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 USP17L11C9JVI0 530 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 USP17L18D6R9N7 530 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 USP17L22D6RA61 530 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 USP17L17D6RBQ6 530 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 USP17L19D6RCP7 530 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 USP17L20D6RJB6 530 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 ZBTB5O15062 677 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 TRAPPC3O43617 180 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 SDC4P31431 198 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 KRT76Q01546 638 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 USP17L24Q0WX57 530 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 TMEM35BQ8NCS4 154 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 DPF3Q92784 378 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 ZMYND10O75800 440 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 CYP2E1P05181 493 aaPredicted RBP14.01□□□□□ -0.17
COL6A3-212ENST00000491769 TBC1D9BQ66K14 1250 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 KRT80Q6KB66 452 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 RRM2BQ7LG56 351 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 ARHGEF25Q86VW2 580 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 RASSF3Q86WH2 238 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 SH3TC2Q8TF17 1288 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 AP1M1Q9BXS5 423 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 VPS11Q9H270 941 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 PCSK1NQ9UHG2 260 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 ARHGAP10A1A4S6 786 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 ZNF589Q86UQ0 364 aaPredicted RBP14.01□□□□□ -0.17
COL6A3-212ENST00000491769 INTUQ9ULD6 942 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 A0A087WWV3 80 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 TXNP10599 105 aaKnown RBP14.01□□□□□ -0.17
COL6A3-212ENST00000491769 MICALL2Q8IY33 904 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 ANAPC7Q9UJX3 599 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 CAPN11Q9UMQ6 739 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 MTMR6Q9Y217 621 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 GOLGA8MH3BSY2 632 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 EIF4A3P38919 411 aaKnown RBP14.01□□□□□ -0.17
COL6A3-212ENST00000491769 SLC39A14Q15043 492 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 ARMC6Q6NXE6 501 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 SEPT5Q99719 369 aaPredicted RBP14.01□□□□□ -0.17
COL6A3-212ENST00000491769 KIAA1586Q9HCI6 787 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 POLD4Q9HCU8 107 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 POLR3EQ9NVU0 708 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 HEG1Q9ULI3 1381 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 A0A0G2JLW4 131 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 PLEKHA8P1O95397 391 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 CHRNA5P30532 468 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 RWDD2BP57060 319 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 ESRRGP62508 458 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 PODNQ7Z5L7 613 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 HEMGNQ9BXL5 484 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 MAN1B1Q9UKM7 699 aa14.01□□□□□ -0.17
COL6A3-212ENST00000491769 ZNF197O14709 1029 aa14□□□□□ -0.17
COL6A3-212ENST00000491769 DYNC1LI2O43237 492 aaPredicted RBP14□□□□□ -0.17
COL6A3-212ENST00000491769 MYBP10242 640 aa14□□□□□ -0.17
COL6A3-212ENST00000491769 GCLMP48507 274 aa14□□□□□ -0.17
COL6A3-212ENST00000491769 USP17L6PQ6QN14 398 aa14□□□□□ -0.17
COL6A3-212ENST00000491769 OR6P1Q8NGX9 317 aa14□□□□□ -0.17
COL6A3-212ENST00000491769 ENOX1Q8TC92 643 aaKnown RBP14□□□□□ -0.17
COL6A3-212ENST00000491769 SERPINI1Q99574 410 aa14□□□□□ -0.17
COL6A3-212ENST00000491769 TRIM62Q9BVG3 475 aa14□□□□□ -0.17
COL6A3-212ENST00000491769 SPDYE5A6NIY4 337 aa14□□□□□ -0.17
COL6A3-212ENST00000491769 EFCAB14O75071 495 aa14□□□□□ -0.17
COL6A3-212ENST00000491769 SSTR3P32745 418 aaPredicted RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms