RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 CNOT11Q9UKZ1 510 aaKnown RBP3.05□□□□□ -1.92
HMGB1-208ENST00000490788 NR2E1Q9Y466 385 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 SPO11Q9Y5K1 396 aa3.05□□□□□ -1.92
HMGB1-208ENST00000490788 YEATS2Q9ULM3 1422 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 ZNF891A8MT65 544 aaPredicted RBP3.04□□□□□ -1.92
HMGB1-208ENST00000490788 H2AFYO75367 372 aaKnown RBP3.04□□□□□ -1.92
HMGB1-208ENST00000490788 MPIG6BO95866 241 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 PRLP01236 227 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 ZNF888P0CJ79 500 aaPredicted RBP3.04□□□□□ -1.92
HMGB1-208ENST00000490788 ATP2A2P16615 1042 aaKnown RBP3.04□□□□□ -1.92
HMGB1-208ENST00000490788 POU3F2P20265 443 aaPredicted RBP3.04□□□□□ -1.92
HMGB1-208ENST00000490788 PTX3P26022 381 aaPredicted RBP3.04□□□□□ -1.92
HMGB1-208ENST00000490788 CNGA1P29973 690 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 CSF2RBP32927 897 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 LSP1P33241 339 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 SOX5P35711 763 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 BCAR1P56945 870 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 ADCY2Q08462 1091 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 PCBP1Q15365 356 aaKnown RBP eCLIP3.04□□□□□ -1.92
HMGB1-208ENST00000490788 STILQ15468 1287 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 DGKDQ16760 1214 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 HS1BP3Q53T59 392 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 DDX46Q7L014 1031 aaKnown RBP3.04□□□□□ -1.92
HMGB1-208ENST00000490788 FILIP1Q7Z7B0 1213 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 CHTF18Q8WVB6 975 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 GCDHQ92947 438 aaPredicted RBP3.04□□□□□ -1.92
HMGB1-208ENST00000490788 GFM2Q969S9 779 aaKnown RBP3.04□□□□□ -1.92
HMGB1-208ENST00000490788 FERMT2Q96AC1 680 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 MBD6Q96DN6 1003 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 LRRC37BQ96QE4 947 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 ELF4Q99607 663 aaPredicted RBP3.04□□□□□ -1.92
HMGB1-208ENST00000490788 ORAI3Q9BRQ5 295 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 OR10A2Q9H208 303 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 DEF6Q9H4E7 631 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 SEC61A2Q9H9S3 476 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 PUF60Q9UHX1 559 aaKnown RBP3.04□□□□□ -1.92
HMGB1-208ENST00000490788 MAPRE3Q9UPY8 281 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 SLC4A7Q9Y6M7 1214 aa3.04□□□□□ -1.92
HMGB1-208ENST00000490788 TDRD9Q8NDG6 1382 aaKnown RBP3.03□□□□□ -1.92
HMGB1-208ENST00000490788 GOLGA8BA8MQT2 603 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 DVL2O14641 736 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 DAPK3O43293 454 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 CDC14BO60729 498 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 TOM1O60784 492 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 FKBP9O95302 570 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 ITGB3P05106 788 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 XPAP23025 273 aaPredicted RBP3.03□□□□□ -1.92
HMGB1-208ENST00000490788 LSSP48449 732 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 RGS3P49796 1198 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 MRE11P49959 708 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 STAT5BP51692 787 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 EPHB4P54760 987 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 DSG1Q02413 1049 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 EIF4HQ15056 248 aaKnown RBP3.03□□□□□ -1.92
HMGB1-208ENST00000490788 PCOLCEQ15113 449 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 SPATS1Q496A3 300 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 ATP13A4Q4VNC1 1196 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 AGBL4Q5VU57 503 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 KANK2Q63ZY3 851 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 TMEM200BQ69YZ2 307 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 KLHDC10Q6PID8 442 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 ESPNLQ6ZVH7 1005 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 USP30Q70CQ3 517 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 FKBP9P1Q75LS8 142 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 LIMS2Q7Z4I7 341 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 RTN4RL1Q86UN2 441 aaPredicted RBP3.03□□□□□ -1.92
HMGB1-208ENST00000490788 CHAC2Q8WUX2 184 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 RTF1Q92541 710 aaKnown RBP3.03□□□□□ -1.92
HMGB1-208ENST00000490788 LPPQ93052 612 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 FOXRED1Q96CU9 486 aaPredicted RBP3.03□□□□□ -1.92
HMGB1-208ENST00000490788 DYDC2Q96IM9 177 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 C16orf92Q96LL3 132 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 SAMD11Q96NU1 681 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 TTC1Q99614 292 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 GPR20Q99678 358 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 TMX1Q9H3N1 280 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 CAAP1Q9H8G2 361 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 SMPD4Q9NXE4 827 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 KCMF1Q9P0J7 381 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 H2AFY2Q9P0M6 372 aaPredicted RBP3.03□□□□□ -1.92
HMGB1-208ENST00000490788 USP36Q9P275 1121 aaKnown RBP3.03□□□□□ -1.92
HMGB1-208ENST00000490788 MSRAQ9UJ68 235 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 VWA7Q9Y334 891 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 NOC2LQ9Y3T9 749 aaKnown RBP3.03□□□□□ -1.92
HMGB1-208ENST00000490788 TCAF1Q9Y4C2 921 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 CFAP43Q8NDM7 1665 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 CEP170Q5SW79 1584 aa3.03□□□□□ -1.92
HMGB1-208ENST00000490788 TEX14Q8IWB6 1497 aa3.03□□□□□ -1.93
HMGB1-208ENST00000490788 ADAMTSL3P82987 1691 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 MADDQ8WXG6 1647 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 ARHGAP6O43182 974 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 ULK1O75385 1050 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 PRPF6O94906 941 aaKnown RBP3.02□□□□□ -1.93
HMGB1-208ENST00000490788 CR2P20023 1033 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 HHEXQ03014 270 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 EFEMP1Q12805 493 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 STRN3Q13033 797 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 LRRC32Q14392 662 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 NOLC1Q14978 699 aaKnown RBP eCLIP3.02□□□□□ -1.93
HMGB1-208ENST00000490788 DDB1Q16531 1140 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms