RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 MTMR6Q9Y217 621 aa19.34■□□□□ 0.69
MDC1-206ENST00000489540 RBAK-RBAKDNI3L0D1 243 aa19.34■□□□□ 0.69
MDC1-206ENST00000489540 CA3P07451 260 aa19.34■□□□□ 0.69
MDC1-206ENST00000489540 EMC2Q15006 297 aa19.34■□□□□ 0.69
MDC1-206ENST00000489540 IL17AQ16552 155 aa19.34■□□□□ 0.69
MDC1-206ENST00000489540 PPP2R2DQ66LE6 453 aa19.34■□□□□ 0.69
MDC1-206ENST00000489540 FAM117BQ6P1L5 589 aa19.34■□□□□ 0.69
MDC1-206ENST00000489540 RTN4RL1Q86UN2 441 aaPredicted RBP19.34■□□□□ 0.69
MDC1-206ENST00000489540 FAM228AQ86W67 206 aa19.34■□□□□ 0.69
MDC1-206ENST00000489540 TMEM143Q96AN5 459 aa19.34■□□□□ 0.69
MDC1-206ENST00000489540 MTRQ99707 1265 aa19.34■□□□□ 0.69
MDC1-206ENST00000489540 INO80BQ9C086 356 aaPredicted RBP19.34■□□□□ 0.69
MDC1-206ENST00000489540 TSPYL2Q9H2G4 693 aaPredicted RBP19.34■□□□□ 0.69
MDC1-206ENST00000489540 ZSCAN16Q9H4T2 348 aaPredicted RBP19.34■□□□□ 0.69
MDC1-206ENST00000489540 RESTQ13127 1097 aa19.33■□□□□ 0.68
MDC1-206ENST00000489540 SNX29Q8TEQ0 813 aa19.33■□□□□ 0.68
MDC1-206ENST00000489540 PRPF31Q8WWY3 499 aaKnown RBP19.33■□□□□ 0.68
MDC1-206ENST00000489540 TMX1Q9H3N1 280 aa19.33■□□□□ 0.68
MDC1-206ENST00000489540 ATP6V0A4Q9HBG4 840 aa19.33■□□□□ 0.68
MDC1-206ENST00000489540 RNF216Q9NWF9 866 aaPredicted RBP19.33■□□□□ 0.68
MDC1-206ENST00000489540 COL4A3BPQ9Y5P4 624 aa19.33■□□□□ 0.68
MDC1-206ENST00000489540 A0A087WWV3 80 aa19.32■□□□□ 0.68
MDC1-206ENST00000489540 A0A087WZ62 844 aa19.32■□□□□ 0.68
MDC1-206ENST00000489540 UPP2O95045 317 aa19.32■□□□□ 0.68
MDC1-206ENST00000489540 HTRA4P83105 476 aaPredicted RBP19.32■□□□□ 0.68
MDC1-206ENST00000489540 MXD4Q14582 209 aaPredicted RBP19.32■□□□□ 0.68
MDC1-206ENST00000489540 POTEGQ6S5H5 508 aa19.32■□□□□ 0.68
MDC1-206ENST00000489540 ZNF668Q96K58 619 aaPredicted RBP19.32■□□□□ 0.68
MDC1-206ENST00000489540 GUCD1Q96NT3 240 aa19.32■□□□□ 0.68
MDC1-206ENST00000489540 YME1L1Q96TA2 773 aa19.32■□□□□ 0.68
MDC1-206ENST00000489540 CDX2Q99626 313 aaPredicted RBP19.32■□□□□ 0.68
MDC1-206ENST00000489540 FDXACB1Q9BRP7 624 aaPredicted RBP19.32■□□□□ 0.68
MDC1-206ENST00000489540 RGS18Q9NS28 235 aa19.32■□□□□ 0.68
MDC1-206ENST00000489540 C1orf112Q9NSG2 853 aa19.32■□□□□ 0.68
MDC1-206ENST00000489540 KIAA1024Q9UPX6 916 aa19.32■□□□□ 0.68
MDC1-206ENST00000489540 SZT2Q5T011 3432 aa19.31■□□□□ 0.68
MDC1-206ENST00000489540 DENND3A2RUS2 1198 aa19.31■□□□□ 0.68
MDC1-206ENST00000489540 STAG3L1P0CL83 205 aa19.31■□□□□ 0.68
MDC1-206ENST00000489540 LAMTOR4Q0VGL1 99 aa19.31■□□□□ 0.68
MDC1-206ENST00000489540 GRIN2CQ14957 1233 aa19.31■□□□□ 0.68
MDC1-206ENST00000489540 SF3A1Q15459 793 aaKnown RBP19.31■□□□□ 0.68
MDC1-206ENST00000489540 KCTD17Q8N5Z5 321 aa19.31■□□□□ 0.68
MDC1-206ENST00000489540 LINC01599Q8WXQ3 324 aa19.31■□□□□ 0.68
MDC1-206ENST00000489540 AK8Q96MA6 479 aa19.31■□□□□ 0.68
MDC1-206ENST00000489540 NLRP4Q96MN2 994 aa19.31■□□□□ 0.68
MDC1-206ENST00000489540 ADAM2Q99965 735 aa19.31■□□□□ 0.68
MDC1-206ENST00000489540 XPNPEP1Q9NQW7 623 aa19.31■□□□□ 0.68
MDC1-206ENST00000489540 BMP2KQ9NSY1 1161 aaPredicted RBP19.31■□□□□ 0.68
MDC1-206ENST00000489540 ARHGEF35A5YM69 484 aa19.3■□□□□ 0.68
MDC1-206ENST00000489540 VWA3AA6NCI4 1184 aa19.3■□□□□ 0.68
MDC1-206ENST00000489540 ZSCAN20P17040 1043 aaPredicted RBP19.3■□□□□ 0.68
MDC1-206ENST00000489540 TAP1Q03518 808 aa19.3■□□□□ 0.68
MDC1-206ENST00000489540 ECM1Q16610 540 aa19.3■□□□□ 0.68
MDC1-206ENST00000489540 SLC24A5Q71RS6 500 aa19.3■□□□□ 0.68
MDC1-206ENST00000489540 NPAS4Q8IUM7 802 aa19.3■□□□□ 0.68
MDC1-206ENST00000489540 KSR1Q8IVT5 923 aa19.3■□□□□ 0.68
MDC1-206ENST00000489540 MCPH1Q8NEM0 835 aa19.3■□□□□ 0.68
MDC1-206ENST00000489540 DNM3Q9UQ16 869 aa19.3■□□□□ 0.68
MDC1-206ENST00000489540 STXBP5LQ9Y2K9 1186 aa19.3■□□□□ 0.68
MDC1-206ENST00000489540 SRGAP2CP0DJJ0 459 aa19.29■□□□□ 0.68
MDC1-206ENST00000489540 SFPQP23246 707 aaKnown RBP eCLIP19.29■□□□□ 0.68
MDC1-206ENST00000489540 ARL2P36404 184 aa19.29■□□□□ 0.68
MDC1-206ENST00000489540 POU5F1BQ06416 359 aa19.29■□□□□ 0.68
MDC1-206ENST00000489540 DSC3Q14574 896 aa19.29■□□□□ 0.68
MDC1-206ENST00000489540 SRGAP1Q7Z6B7 1085 aa19.29■□□□□ 0.68
MDC1-206ENST00000489540 SP7Q8TDD2 431 aaPredicted RBP19.29■□□□□ 0.68
MDC1-206ENST00000489540 IFT122Q9HBG6 1241 aa19.29■□□□□ 0.68
MDC1-206ENST00000489540 CHST12Q9NRB3 414 aa19.29■□□□□ 0.68
MDC1-206ENST00000489540 DDX19AQ9NUU7 478 aaKnown RBP19.29■□□□□ 0.68
MDC1-206ENST00000489540 LCHNA4D1U4 455 aa19.28■□□□□ 0.68
MDC1-206ENST00000489540 PP2D1A8MPX8 630 aa19.28■□□□□ 0.68
MDC1-206ENST00000489540 SLC26A4O43511 780 aa19.28■□□□□ 0.68
MDC1-206ENST00000489540 MGEA5O60502 916 aa19.28■□□□□ 0.68
MDC1-206ENST00000489540 USO1O60763 962 aaKnown RBP19.28■□□□□ 0.68
MDC1-206ENST00000489540 CDC25AP30304 524 aa19.28■□□□□ 0.68
MDC1-206ENST00000489540 SARSP49591 514 aaKnown RBP19.28■□□□□ 0.68
MDC1-206ENST00000489540 FAM189BP81408 668 aa19.28■□□□□ 0.68
MDC1-206ENST00000489540 TFDP1Q14186 410 aa19.28■□□□□ 0.68
MDC1-206ENST00000489540 PADI6Q6TGC4 694 aa19.28■□□□□ 0.68
MDC1-206ENST00000489540 CRIPAKQ8N1N5 446 aa19.28■□□□□ 0.68
MDC1-206ENST00000489540 MMTAG2Q9BU76 263 aaKnown RBP19.28■□□□□ 0.68
MDC1-206ENST00000489540 LRFN2Q9ULH4 789 aa19.28■□□□□ 0.68
MDC1-206ENST00000489540 PCDHB7Q9Y5E2 793 aa19.28■□□□□ 0.68
MDC1-206ENST00000489540 LINC01553A4QN01 128 aa19.27■□□□□ 0.68
MDC1-206ENST00000489540 C9IYK1 514 aa19.27■□□□□ 0.68
MDC1-206ENST00000489540 CSDE1O75534 798 aaKnown RBP19.27■□□□□ 0.68
MDC1-206ENST00000489540 DGKIO75912 1065 aa19.27■□□□□ 0.68
MDC1-206ENST00000489540 CYP11B2P19099 503 aa19.27■□□□□ 0.68
MDC1-206ENST00000489540 LONP1P36776 959 aaKnown RBP19.27■□□□□ 0.68
MDC1-206ENST00000489540 HYIQ5T013 277 aa19.27■□□□□ 0.68
MDC1-206ENST00000489540 RNF149Q8NC42 400 aa19.27■□□□□ 0.68
MDC1-206ENST00000489540 TGS1Q96RS0 853 aaKnown RBP19.27■□□□□ 0.68
MDC1-206ENST00000489540 NT5C3AQ9H0P0 336 aa19.27■□□□□ 0.68
MDC1-206ENST00000489540 BHMT2Q9H2M3 363 aa19.27■□□□□ 0.68
MDC1-206ENST00000489540 DACT1Q9NYF0 836 aa19.27■□□□□ 0.68
MDC1-206ENST00000489540 CLIC4Q9Y696 253 aa19.27■□□□□ 0.68
MDC1-206ENST00000489540 EVPLQ92817 2033 aa19.27■□□□□ 0.68
MDC1-206ENST00000489540 WDR81Q562E7 1941 aa19.27■□□□□ 0.68
MDC1-206ENST00000489540 EYA4O95677 639 aa19.26■□□□□ 0.67
MDC1-206ENST00000489540 FGFR4P22455 802 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms