RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 POLGP54098 1239 aaPredicted RBP11.46□□□□□ -0.57
SKA1-204ENST00000488454 NPEPPSP55786 919 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 RTP1P59025 263 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 TLE2Q04725 743 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 GRB10Q13322 594 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 LRRC26Q2I0M4 334 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 TRIM60Q495X7 471 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 TMEM119Q4V9L6 283 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 GDF6Q6KF10 455 aaPredicted RBP11.46□□□□□ -0.57
SKA1-204ENST00000488454 ANKRD33Q7Z3H0 272 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 UBE2Q1Q7Z7E8 422 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 RSPH3Q86UC2 560 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 METTL13Q8N6R0 699 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 PDILTQ8N807 584 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 FSIP1Q8NA03 581 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 LMBR1Q8WVP7 490 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 MRPS27Q92552 414 aaKnown RBP11.46□□□□□ -0.57
SKA1-204ENST00000488454 DPF3Q92784 378 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 CCDC34Q96HJ3 373 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 TOX2Q96NM4 488 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 SH2D3AQ9BRG2 576 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 TRPV6Q9H1D0 765 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 BHMT2Q9H2M3 363 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 TRMT13Q9NUP7 481 aaKnown RBP11.46□□□□□ -0.57
SKA1-204ENST00000488454 STK17AQ9UEE5 414 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 TUBE1Q9UJT0 475 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 A0A1B0GVL5 298 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 TMEM150BA6NC51 233 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 TREHO43280 583 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 B4GALT4O60513 344 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 DGAT1O75907 488 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 RPLP2P05387 115 aaKnown RBP11.45□□□□□ -0.58
SKA1-204ENST00000488454 PLA2G4BP0C869 781 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 CYP2C9P11712 490 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 SYKP43405 635 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 ZNF200P98182 395 aaPredicted RBP11.45□□□□□ -0.58
SKA1-204ENST00000488454 PTK7Q13308 1070 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 SNX17Q15036 470 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 TARBP2Q15633 366 aaKnown RBP11.45□□□□□ -0.58
SKA1-204ENST00000488454 EFCAB12Q6NXP0 572 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 TAF2Q6P1X5 1199 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 MTHFD1LQ6UB35 978 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 SV2BQ7L1I2 683 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 METTL3Q86U44 580 aaKnown RBP11.45□□□□□ -0.58
SKA1-204ENST00000488454 FAM126BQ8IXS8 530 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 CEP57L1Q8IYX8 460 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 CCDC155Q8N6L0 562 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 TMEM87AQ8NBN3 555 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 TRAPPC12Q8WVT3 735 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 DHX58Q96C10 678 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 LRRC27Q9C0I9 530 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 CUEDC2Q9H467 287 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 SUGCTQ9HAC7 445 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 PRKAG2Q9UGJ0 569 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 PCDHA2Q9Y5H9 948 aa11.45□□□□□ -0.58
SKA1-204ENST00000488454 DOCK5Q9H7D0 1870 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 ZBTB42B2RXF5 422 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 GAS2O43903 313 aaKnown RBP11.44□□□□□ -0.58
SKA1-204ENST00000488454 MAFO75444 373 aaPredicted RBP11.44□□□□□ -0.58
SKA1-204ENST00000488454 KRT18P05783 430 aaKnown RBP11.44□□□□□ -0.58
SKA1-204ENST00000488454 PFKFB1P16118 471 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 UBE2HP62256 183 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 ADAM17P78536 824 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 AMPD3Q01432 767 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 BFSP2Q13515 415 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 DHX8Q14562 1220 aaKnown RBP11.44□□□□□ -0.58
SKA1-204ENST00000488454 MARCH8Q5T0T0 291 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 NME8Q8N427 588 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 SYT2Q8N9I0 419 aaPredicted RBP11.44□□□□□ -0.58
SKA1-204ENST00000488454 MCPH1Q8NEM0 835 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 TCP11Q8WWU5 503 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 LARP4BQ92615 738 aaKnown RBP11.44□□□□□ -0.58
SKA1-204ENST00000488454 RAD54LQ92698 747 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 MAP7D2Q96T17 732 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 MTRQ99707 1265 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 TMEM134Q9H6X4 195 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 ATP6V0A4Q9HBG4 840 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 TMEM39AQ9NV64 488 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 USP25Q9UHP3 1055 aa11.44□□□□□ -0.58
SKA1-204ENST00000488454 SMIM35A0A1B0GVV1 85 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 MBLAC1A4D2B0 266 aaPredicted RBP11.43□□□□□ -0.58
SKA1-204ENST00000488454 M0QZ92 97 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 USO1O60763 962 aaKnown RBP11.43□□□□□ -0.58
SKA1-204ENST00000488454 RNF40O75150 1001 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 C22orf31O95567 290 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 CD4P01730 458 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 CLTBP09497 229 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 CYP11B2P19099 503 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 HOXC8P31273 242 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 THPOP40225 353 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 NDUFA8P51970 172 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 CDC42EP1Q00587 391 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 FAAP100Q0VG06 881 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 MCM6Q14566 821 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 FAM102BQ5T8I3 360 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 IER5Q5VY09 327 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 NYAP1Q6ZVC0 841 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 MAEAQ7L5Y9 396 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 KCNK18Q7Z418 384 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 SERINC5Q86VE9 423 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms