RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 KLF1Q13351 362 aaPredicted RBP7.31□□□□□ -1.24
USP48-209ENST00000487880 ZNF827Q17R98 1081 aa7.31□□□□□ -1.24
USP48-209ENST00000487880 RGL3Q3MIN7 710 aa7.31□□□□□ -1.24
USP48-209ENST00000487880 PITRM1Q5JRX3 1037 aa7.31□□□□□ -1.24
USP48-209ENST00000487880 LCE1DQ5T752 114 aa7.31□□□□□ -1.24
USP48-209ENST00000487880 TRIM68Q6AZZ1 485 aa7.31□□□□□ -1.24
USP48-209ENST00000487880 LCNL1Q6ZST4 164 aa7.31□□□□□ -1.24
USP48-209ENST00000487880 SLC41A1Q8IVJ1 513 aa7.31□□□□□ -1.24
USP48-209ENST00000487880 ANO3Q9BYT9 981 aa7.31□□□□□ -1.24
USP48-209ENST00000487880 TRHDEQ9UKU6 1024 aa7.31□□□□□ -1.24
USP48-209ENST00000487880 MYPNQ86TC9 1320 aa7.3□□□□□ -1.24
USP48-209ENST00000487880 ST20-MTHFSA0A0A6YYL1 179 aa7.3□□□□□ -1.24
USP48-209ENST00000487880 GABRDO14764 452 aa7.3□□□□□ -1.24
USP48-209ENST00000487880 CYP1A1P04798 512 aaPredicted RBP7.3□□□□□ -1.24
USP48-209ENST00000487880 CLEC2LP0C7M8 214 aa7.3□□□□□ -1.24
USP48-209ENST00000487880 GPR3P46089 330 aa7.3□□□□□ -1.24
USP48-209ENST00000487880 ANTXR2P58335 489 aa7.3□□□□□ -1.24
USP48-209ENST00000487880 EXOSC10Q01780 885 aaKnown RBP7.3□□□□□ -1.24
USP48-209ENST00000487880 DGKDQ16760 1214 aa7.3□□□□□ -1.24
USP48-209ENST00000487880 OTOP2Q7RTS6 562 aa7.3□□□□□ -1.24
USP48-209ENST00000487880 SIAH1Q8IUQ4 282 aa7.3□□□□□ -1.24
USP48-209ENST00000487880 SP8Q8IXZ3 490 aa7.3□□□□□ -1.24
USP48-209ENST00000487880 LCORQ96JN0 433 aaPredicted RBP7.3□□□□□ -1.24
USP48-209ENST00000487880 CCDC8Q9H0W5 538 aaPredicted RBP7.3□□□□□ -1.24
USP48-209ENST00000487880 PRDM12Q9H4Q4 367 aa7.3□□□□□ -1.24
USP48-209ENST00000487880 KCNG1Q9UIX4 513 aa7.3□□□□□ -1.24
USP48-209ENST00000487880 GOLGA8AA7E2F4 631 aa7.29□□□□□ -1.24
USP48-209ENST00000487880 GOLGA8BA8MQT2 603 aa7.29□□□□□ -1.24
USP48-209ENST00000487880 CELA3BP08861 270 aa7.29□□□□□ -1.24
USP48-209ENST00000487880 PDGFRBP09619 1106 aa7.29□□□□□ -1.24
USP48-209ENST00000487880 ZSCAN22P10073 491 aaPredicted RBP7.29□□□□□ -1.24
USP48-209ENST00000487880 KCNC1P48547 511 aa7.29□□□□□ -1.24
USP48-209ENST00000487880 SCAND1P57086 179 aa7.29□□□□□ -1.24
USP48-209ENST00000487880 ITKQ08881 620 aa7.29□□□□□ -1.24
USP48-209ENST00000487880 KRTAP19-4Q3LI73 84 aa7.29□□□□□ -1.24
USP48-209ENST00000487880 CCDC62Q6P9F0 684 aa7.29□□□□□ -1.24
USP48-209ENST00000487880 FERMT3Q86UX7 667 aa7.29□□□□□ -1.24
USP48-209ENST00000487880 IFNL2Q8IZJ0 200 aa7.29□□□□□ -1.24
USP48-209ENST00000487880 MARCH10Q8NA82 808 aaPredicted RBP7.29□□□□□ -1.24
USP48-209ENST00000487880 RSAD2Q8WXG1 361 aa7.29□□□□□ -1.24
USP48-209ENST00000487880 MTMR8Q96EF0 704 aa7.29□□□□□ -1.24
USP48-209ENST00000487880 BARX1Q9HBU1 254 aaPredicted RBP7.29□□□□□ -1.24
USP48-209ENST00000487880 CDC42EP3Q9UKI2 254 aa7.29□□□□□ -1.24
USP48-209ENST00000487880 A0A0A6YYK5 440 aaPredicted RBP7.28□□□□□ -1.24
USP48-209ENST00000487880 MROH6A6NGR9 719 aa7.28□□□□□ -1.24
USP48-209ENST00000487880 TRIM75PA6NK02 468 aa7.28□□□□□ -1.24
USP48-209ENST00000487880 MAFGO15525 162 aa7.28□□□□□ -1.24
USP48-209ENST00000487880 PCDH8O95206 1070 aa7.28□□□□□ -1.24
USP48-209ENST00000487880 HMGCRP04035 888 aa7.28□□□□□ -1.24
USP48-209ENST00000487880 KCNQ1P51787 676 aa7.28□□□□□ -1.24
USP48-209ENST00000487880 TRIM25Q14258 630 aaKnown RBP7.28□□□□□ -1.24
USP48-209ENST00000487880 CT83Q5H943 113 aa7.28□□□□□ -1.24
USP48-209ENST00000487880 LARP4Q71RC2 724 aaKnown RBP eCLIP7.28□□□□□ -1.24
USP48-209ENST00000487880 NKD2Q969F2 451 aaPredicted RBP7.28□□□□□ -1.24
USP48-209ENST00000487880 EAF2Q96CJ1 260 aaPredicted RBP7.28□□□□□ -1.24
USP48-209ENST00000487880 DYDC2Q96IM9 177 aa7.28□□□□□ -1.24
USP48-209ENST00000487880 KCNC2Q96PR1 638 aa7.28□□□□□ -1.24
USP48-209ENST00000487880 PUS7Q96PZ0 661 aaKnown RBP7.28□□□□□ -1.24
USP48-209ENST00000487880 SOX7Q9BT81 388 aa7.28□□□□□ -1.24
USP48-209ENST00000487880 CARD11Q9BXL7 1154 aa7.28□□□□□ -1.24
USP48-209ENST00000487880 CCM2LQ9NUG4 571 aaPredicted RBP7.28□□□□□ -1.24
USP48-209ENST00000487880 POLR3BQ9NW08 1133 aaPredicted RBP7.28□□□□□ -1.24
USP48-209ENST00000487880 PCDHB6Q9Y5E3 794 aa7.28□□□□□ -1.24
USP48-209ENST00000487880 ADAMTS20P59510 1910 aa7.28□□□□□ -1.24
USP48-209ENST00000487880 WASHC2AQ641Q2 1341 aa7.27□□□□□ -1.24
USP48-209ENST00000487880 FZD9O00144 591 aa7.27□□□□□ -1.25
USP48-209ENST00000487880 IARSP41252 1262 aaKnown RBP7.27□□□□□ -1.25
USP48-209ENST00000487880 GPR15P49685 360 aa7.27□□□□□ -1.25
USP48-209ENST00000487880 GJA9P57773 515 aa7.27□□□□□ -1.25
USP48-209ENST00000487880 USP10Q14694 798 aaKnown RBP7.27□□□□□ -1.25
USP48-209ENST00000487880 UGT8Q16880 541 aa7.27□□□□□ -1.25
USP48-209ENST00000487880 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.27□□□□□ -1.25
USP48-209ENST00000487880 CCDC178Q5BJE1 867 aa7.27□□□□□ -1.25
USP48-209ENST00000487880 KCNK18Q7Z418 384 aa7.27□□□□□ -1.25
USP48-209ENST00000487880 CDYL2Q8N8U2 506 aa7.27□□□□□ -1.25
USP48-209ENST00000487880 SYT8Q8NBV8 401 aa7.27□□□□□ -1.25
USP48-209ENST00000487880 PPP1R14CQ8TAE6 165 aa7.27□□□□□ -1.25
USP48-209ENST00000487880 NOL10Q9BSC4 688 aaKnown RBP7.27□□□□□ -1.25
USP48-209ENST00000487880 KCTD10Q9H3F6 313 aa7.27□□□□□ -1.25
USP48-209ENST00000487880 SAE1Q9UBE0 346 aaPredicted RBP7.27□□□□□ -1.25
USP48-209ENST00000487880 PRSS50Q9UI38 385 aa7.27□□□□□ -1.25
USP48-209ENST00000487880 VWA7Q9Y334 891 aa7.27□□□□□ -1.25
USP48-209ENST00000487880 H2AFYO75367 372 aaKnown RBP7.26□□□□□ -1.25
USP48-209ENST00000487880 SEC24DO94855 1032 aaPredicted RBP7.26□□□□□ -1.25
USP48-209ENST00000487880 ZNF888P0CJ79 500 aaPredicted RBP7.26□□□□□ -1.25
USP48-209ENST00000487880 STAT5BP51692 787 aa7.26□□□□□ -1.25
USP48-209ENST00000487880 MRPS9P82933 396 aaKnown RBP7.26□□□□□ -1.25
USP48-209ENST00000487880 NT5DC1Q5TFE4 455 aa7.26□□□□□ -1.25
USP48-209ENST00000487880 TGFBRAP1Q8WUH2 860 aa7.26□□□□□ -1.25
USP48-209ENST00000487880 RAX2Q96IS3 184 aa7.26□□□□□ -1.25
USP48-209ENST00000487880 HIST1H2AHQ96KK5 128 aa7.26□□□□□ -1.25
USP48-209ENST00000487880 HIST1H2AJQ99878 128 aa7.26□□□□□ -1.25
USP48-209ENST00000487880 KRTAP4-7Q9BYR0 210 aa7.26□□□□□ -1.25
USP48-209ENST00000487880 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.26□□□□□ -1.25
USP48-209ENST00000487880 MAGEL2Q9UJ55 1249 aa7.26□□□□□ -1.25
USP48-209ENST00000487880 PTPN22Q9Y2R2 807 aa7.26□□□□□ -1.25
USP48-209ENST00000487880 B4GALT3O60512 393 aa7.25□□□□□ -1.25
USP48-209ENST00000487880 LPLP06858 475 aa7.25□□□□□ -1.25
USP48-209ENST00000487880 KRT85P78386 507 aa7.25□□□□□ -1.25
USP48-209ENST00000487880 KIAA2012Q0VF49 1180 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms