RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 UBL4BQ8N7F7 174 aa6.73□□□□□ -1.33
VPS13D-209ENST00000487188 CNKSR2Q8WXI2 1034 aa6.73□□□□□ -1.33
VPS13D-209ENST00000487188 DDX27Q96GQ7 796 aaKnown RBP6.73□□□□□ -1.33
VPS13D-209ENST00000487188 SYT15Q9BQS2 421 aa6.73□□□□□ -1.33
VPS13D-209ENST00000487188 NT5C3AQ9H0P0 336 aa6.73□□□□□ -1.33
VPS13D-209ENST00000487188 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.73□□□□□ -1.33
VPS13D-209ENST00000487188 SUCLA2Q9P2R7 463 aaPredicted RBP6.73□□□□□ -1.33
VPS13D-209ENST00000487188 NKX1-2Q9UD57 310 aaPredicted RBP6.73□□□□□ -1.33
VPS13D-209ENST00000487188 TMEM59LQ9UK28 342 aa6.73□□□□□ -1.33
VPS13D-209ENST00000487188 LRCH1Q9Y2L9 728 aa6.73□□□□□ -1.33
VPS13D-209ENST00000487188 TACC3Q9Y6A5 838 aa6.73□□□□□ -1.33
VPS13D-209ENST00000487188 FAM205AQ6ZU69 1335 aa6.73□□□□□ -1.33
VPS13D-209ENST00000487188 PASKQ96RG2 1323 aa6.73□□□□□ -1.33
VPS13D-209ENST00000487188 hCG_2014768A0A024R1R8 64 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 NKRFO15226 690 aaKnown RBP eCLIP6.72□□□□□ -1.33
VPS13D-209ENST00000487188 PTDSS1P48651 473 aaKnown RBP6.72□□□□□ -1.33
VPS13D-209ENST00000487188 C6orf163Q5TEZ5 329 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 FYB2Q5VWT5 728 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 BTNL9Q6UXG8 535 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 PPP1R21Q6ZMI0 780 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 HS2ST1Q7LGA3 356 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 RNF168Q8IYW5 571 aaPredicted RBP6.72□□□□□ -1.33
VPS13D-209ENST00000487188 PROM2Q8N271 834 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 FITM2Q8N6M3 262 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 RBBP8NLQ8NC74 664 aaPredicted RBP6.72□□□□□ -1.33
VPS13D-209ENST00000487188 GRAMD1AQ96CP6 724 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 OPTNQ96CV9 577 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 ORAI2Q96SN7 254 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 CENPKQ9BS16 269 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 MTFR1LQ9H019 292 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 USP40Q9NVE5 1235 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 INTUQ9ULD6 942 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 PITPNM2Q9BZ72 1349 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 IRS4O14654 1257 aaPredicted RBP6.72□□□□□ -1.33
VPS13D-209ENST00000487188 THAP12O43422 761 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 TLR2O60603 784 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 ATP9AO75110 1047 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 UBTFL6P0CB48 400 aaPredicted RBP6.72□□□□□ -1.33
VPS13D-209ENST00000487188 TPP2P29144 1249 aaPredicted RBP6.72□□□□□ -1.33
VPS13D-209ENST00000487188 RNASELQ05823 741 aaKnown RBP6.72□□□□□ -1.33
VPS13D-209ENST00000487188 DIXDC1Q155Q3 683 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 ACBD5Q5T8D3 534 aaPredicted RBP6.72□□□□□ -1.33
VPS13D-209ENST00000487188 PHLDB3Q6NSJ2 640 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 ARHGAP27Q6ZUM4 889 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 SRRM1Q8IYB3 904 aaKnown RBP6.72□□□□□ -1.33
VPS13D-209ENST00000487188 RNF25Q96BH1 459 aaPredicted RBP6.72□□□□□ -1.33
VPS13D-209ENST00000487188 LRRC4CQ9HCJ2 640 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 DNAJC17Q9NVM6 304 aaKnown RBP6.72□□□□□ -1.33
VPS13D-209ENST00000487188 STK17AQ9UEE5 414 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 SEC63Q9UGP8 760 aaKnown RBP6.72□□□□□ -1.33
VPS13D-209ENST00000487188 LTN1O94822 1766 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 PVALEFA0A1B0GWK0 134 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 MAGEA13PA6NCF6 341 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 CCDC160A6NGH7 325 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 PLCG2P16885 1265 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 TUBP50607 506 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 CTSWP56202 376 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 CDR2Q01850 454 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 TROAPQ12815 778 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 EXOC3L4Q17RC7 722 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 SGSM1Q2NKQ1 1148 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 CCDC65Q8IXS2 484 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.72□□□□□ -1.33
VPS13D-209ENST00000487188 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.72□□□□□ -1.33
VPS13D-209ENST00000487188 DDX17Q92841 729 aaKnown RBP6.72□□□□□ -1.33
VPS13D-209ENST00000487188 DYDC2Q96IM9 177 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 RMDN2Q96LZ7 410 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 MYLK2Q9H1R3 596 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 C6orf50Q9HD87 102 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 PDP2Q9P2J9 529 aa6.72□□□□□ -1.33
VPS13D-209ENST00000487188 MYMKA6NI61 221 aa6.71□□□□□ -1.33
VPS13D-209ENST00000487188 NMT2O60551 498 aa6.71□□□□□ -1.33
VPS13D-209ENST00000487188 OPHN1O60890 802 aa6.71□□□□□ -1.33
VPS13D-209ENST00000487188 ACTN1P12814 892 aa6.71□□□□□ -1.33
VPS13D-209ENST00000487188 EPHB2P29323 1055 aa6.71□□□□□ -1.33
VPS13D-209ENST00000487188 SKIV2L2P42285 1042 aaKnown RBP6.71□□□□□ -1.33
VPS13D-209ENST00000487188 PTENP60484 403 aa6.71□□□□□ -1.33
VPS13D-209ENST00000487188 AUHQ13825 339 aaKnown RBP6.71□□□□□ -1.33
VPS13D-209ENST00000487188 RCN1Q15293 331 aa6.71□□□□□ -1.33
VPS13D-209ENST00000487188 CALCRLQ16602 461 aa6.71□□□□□ -1.33
VPS13D-209ENST00000487188 CCDC174Q6PII3 467 aa6.71□□□□□ -1.33
VPS13D-209ENST00000487188 LRP10Q7Z4F1 713 aa6.71□□□□□ -1.33
VPS13D-209ENST00000487188 NEK8Q86SG6 692 aa6.71□□□□□ -1.33
VPS13D-209ENST00000487188 ZBTB38Q8NAP3 1195 aaPredicted RBP6.71□□□□□ -1.33
VPS13D-209ENST00000487188 ZNF512BQ96KM6 892 aaPredicted RBP6.71□□□□□ -1.33
VPS13D-209ENST00000487188 CCDC134Q9H6E4 229 aa6.71□□□□□ -1.33
VPS13D-209ENST00000487188 DCLRE1BQ9H816 532 aa6.71□□□□□ -1.33
VPS13D-209ENST00000487188 NAGPAQ9UK23 515 aa6.71□□□□□ -1.33
VPS13D-209ENST00000487188 ZMYND8Q9ULU4 1186 aaPredicted RBP6.71□□□□□ -1.33
VPS13D-209ENST00000487188 MYH7P12883 1935 aa6.71□□□□□ -1.33
VPS13D-209ENST00000487188 PNPLA7Q6ZV29 1317 aa6.71□□□□□ -1.33
VPS13D-209ENST00000487188 USP17L12C9JPN9 530 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 USP17L21D6R901 530 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 PODXLO00592 558 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 PEX11AO75192 247 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 TPBGLP0DKB5 382 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 HSPA6P17066 643 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 FUT2Q10981 343 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 MAPK7Q13164 816 aa6.71□□□□□ -1.34
VPS13D-209ENST00000487188 TBC1D25Q3MII6 688 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms