RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 GPBP1L1Q9HC44 474 aaPredicted RBP13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 SPATS2LQ9NUQ6 558 aaKnown RBP13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 RNF14Q9UBS8 474 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 RABGAP1Q9Y3P9 1069 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 SIPA1L3O60292 1781 aaPredicted RBP13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 COL1A1P02452 1464 aaPredicted RBP13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 RASSF10A6NK89 507 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 F5H6K3 240 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 TRIM49P0CI25 452 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 TRIM49CP0CI26 452 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 RPL13P26373 211 aaKnown RBP13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 ARHGAP4P98171 946 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 KLRC3Q07444 240 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 SLC35G1Q2M3R5 365 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 ODR4Q5SWX8 454 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 GPATCH4Q5T3I0 446 aaKnown RBP13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 FAM178BQ8IXR5 827 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 LRRC34Q8IZ02 419 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 IQCKQ8N0W5 287 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 RNF10Q8N5U6 811 aaKnown RBP13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 OSBPL7Q9BZF2 842 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 GCNT4Q9P109 453 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 CHRNA5P30532 468 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 PTK2Q05397 1052 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 ZNF543Q08ER8 600 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 ITGB3BPQ13352 177 aaPredicted RBP13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 MESDQ14696 234 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 METTL13Q8N6R0 699 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 ANKS1AQ92625 1134 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 ZBTB10Q96DT7 871 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 XPO6Q96QU8 1125 aaKnown RBP13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 FRMD4BQ9Y2L6 1034 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 AKAP11Q9UKA4 1901 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 KLRC4O43908 158 aa13.33□□□□□ -0.27
SHROOM3-208ENST00000486758 CUL1Q13616 776 aa13.33□□□□□ -0.27
SHROOM3-208ENST00000486758 SLC18A3Q16572 532 aa13.33□□□□□ -0.27
SHROOM3-208ENST00000486758 AP1ARQ63HQ0 302 aa13.33□□□□□ -0.27
SHROOM3-208ENST00000486758 IKZF4Q9H2S9 585 aa13.33□□□□□ -0.27
SHROOM3-208ENST00000486758 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.33□□□□□ -0.27
SHROOM3-208ENST00000486758 ANP32DO95626 131 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 ALAS1P13196 640 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 HMGB2P26583 209 aaKnown RBP13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 NMT1P30419 496 aaKnown RBP13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 BIRC3Q13489 604 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 SPRED3Q2MJR0 410 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 PPP4R3AQ6IN85 833 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 CDC42EP5Q6NZY7 148 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 ARHGEF2Q92974 986 aaKnown RBP13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 CEP72Q9P209 647 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 ZC3H4Q9UPT8 1303 aaKnown RBP13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 BCL9LQ86UU0 1499 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 GPR75-ASB3A0A0A6YYF3 556 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 GOLGA8IPA6NC78 632 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 GOLGA8JA6NMD2 632 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 HIP1RO75146 1068 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 STAT1P42224 750 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 PSMC6P62333 389 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 SLC15A2Q16348 729 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 ZC2HC1CQ53FD0 456 aaPredicted RBP13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 WDR78Q5VTH9 848 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 ZNF746Q6NUN9 644 aaPredicted RBP13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 GLYCTKQ8IVS8 523 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 ELMO3Q96BJ8 720 aa13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 CNOT8Q9UFF9 292 aaKnown RBP13.33□□□□□ -0.28
SHROOM3-208ENST00000486758 GRID2IPA4D2P6 1211 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 SMIM24O75264 130 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 ZNF131P52739 623 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 TNIP1Q15025 636 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 AOC3Q16853 763 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 SLC10A5Q5PT55 438 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 CAPRIN2Q6IMN6 1127 aaKnown RBP13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 TAB3Q8N5C8 712 aaPredicted RBP13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 SLC17A8Q8NDX2 589 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 IFT74Q96LB3 600 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 NUCKS1Q9H1E3 243 aaKnown RBP13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 ECT2Q9H8V3 914 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 FGFR1OP2Q9NVK5 253 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 SERPINA10Q9UK55 444 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 H0YIN7 160 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 CALUO43852 315 aaPredicted RBP13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 LARGE2Q8N3Y3 721 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 GUF1Q8N442 669 aaKnown RBP13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 C7orf25Q9BPX7 421 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 FGFBP2Q9BYJ0 223 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 NKIRAS1Q9NYS0 192 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 NOP53Q9NZM5 478 aaKnown RBP13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 KDM3AQ9Y4C1 1321 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 CCT8L1PA6NM43 557 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 RASGRF2O14827 1237 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 MYL1P05976 194 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 MYBP10242 640 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 MXRA7P84157 204 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 LRRC63Q05C16 580 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 SLC29A2Q14542 456 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 PREPLQ4J6C6 727 aaPredicted RBP13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 HP1BP3Q5SSJ5 553 aaPredicted RBP13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 PNMA5Q96PV4 448 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 ISCUQ9H1K1 167 aa13.32□□□□□ -0.28
SHROOM3-208ENST00000486758 BLOC1S4Q9NUP1 217 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms