RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 ARHGEF15O94989 841 aa19.01■□□□□ 0.63
VIM-205ENST00000485947 CRYBB1P53674 252 aaPredicted RBP19.01■□□□□ 0.63
VIM-205ENST00000485947 PPP2R5CQ13362 524 aa19.01■□□□□ 0.63
VIM-205ENST00000485947 XKR3Q5GH77 459 aa19.01■□□□□ 0.63
VIM-205ENST00000485947 AXDND1Q5T1B0 1012 aaPredicted RBP19.01■□□□□ 0.63
VIM-205ENST00000485947 C4orf32Q8N8J7 132 aa19.01■□□□□ 0.63
VIM-205ENST00000485947 GPT2Q8TD30 523 aa19.01■□□□□ 0.63
VIM-205ENST00000485947 MAP7D2Q96T17 732 aa19.01■□□□□ 0.63
VIM-205ENST00000485947 NIFKQ9BYG3 293 aaKnown RBP19.01■□□□□ 0.63
VIM-205ENST00000485947 AGO3Q9H9G7 860 aaKnown RBP19.01■□□□□ 0.63
VIM-205ENST00000485947 KCNMB3Q9NPA1 279 aa19.01■□□□□ 0.63
VIM-205ENST00000485947 THEGQ9P2T0 379 aa19.01■□□□□ 0.63
VIM-205ENST00000485947 PADI3Q9ULW8 664 aa19.01■□□□□ 0.63
VIM-205ENST00000485947 PPME1Q9Y570 386 aa19.01■□□□□ 0.63
VIM-205ENST00000485947 PTPRSQ13332 1948 aa19■□□□□ 0.63
VIM-205ENST00000485947 OR52Z1P0C646 297 aa19■□□□□ 0.63
VIM-205ENST00000485947 STAG3L1P0CL83 205 aa19■□□□□ 0.63
VIM-205ENST00000485947 CD52P31358 61 aa19■□□□□ 0.63
VIM-205ENST00000485947 PRKCEQ02156 737 aa19■□□□□ 0.63
VIM-205ENST00000485947 GRB10Q13322 594 aa19■□□□□ 0.63
VIM-205ENST00000485947 FAM117BQ6P1L5 589 aa19■□□□□ 0.63
VIM-205ENST00000485947 EXOC8Q8IYI6 725 aa19■□□□□ 0.63
VIM-205ENST00000485947 SLFN12Q8IYM2 578 aa19■□□□□ 0.63
VIM-205ENST00000485947 MRPS27Q92552 414 aaKnown RBP19■□□□□ 0.63
VIM-205ENST00000485947 CERS4Q9HA82 394 aa19■□□□□ 0.63
VIM-205ENST00000485947 SUGCTQ9HAC7 445 aa19■□□□□ 0.63
VIM-205ENST00000485947 EPOPA6NHQ4 379 aa18.99■□□□□ 0.63
VIM-205ENST00000485947 ZNF862O60290 1169 aa18.99■□□□□ 0.63
VIM-205ENST00000485947 LPXNO60711 386 aa18.99■□□□□ 0.63
VIM-205ENST00000485947 UPP2O95045 317 aa18.99■□□□□ 0.63
VIM-205ENST00000485947 RB1P06400 928 aa18.99■□□□□ 0.63
VIM-205ENST00000485947 CMA1P23946 247 aa18.99■□□□□ 0.63
VIM-205ENST00000485947 AAK1Q2M2I8 961 aa18.99■□□□□ 0.63
VIM-205ENST00000485947 CCDC73Q6ZRK6 1079 aa18.99■□□□□ 0.63
VIM-205ENST00000485947 NPAS4Q8IUM7 802 aa18.99■□□□□ 0.63
VIM-205ENST00000485947 METTL13Q8N6R0 699 aa18.99■□□□□ 0.63
VIM-205ENST00000485947 LINC01465Q8N7H1 131 aa18.99■□□□□ 0.63
VIM-205ENST00000485947 SYAP1Q96A49 352 aaPredicted RBP18.99■□□□□ 0.63
VIM-205ENST00000485947 ZBTB10Q96DT7 871 aa18.99■□□□□ 0.63
VIM-205ENST00000485947 UIMC1Q96RL1 719 aa18.99■□□□□ 0.63
VIM-205ENST00000485947 C1orf112Q9NSG2 853 aa18.99■□□□□ 0.63
VIM-205ENST00000485947 COG5Q9UP83 839 aa18.99■□□□□ 0.63
VIM-205ENST00000485947 MYH9P35579 1960 aaKnown RBP18.99■□□□□ 0.63
VIM-205ENST00000485947 FAM237AA0A1B0GTK4 181 aa18.98■□□□□ 0.63
VIM-205ENST00000485947 CHMP2AO43633 222 aa18.98■□□□□ 0.63
VIM-205ENST00000485947 RPS6KA5O75582 802 aa18.98■□□□□ 0.63
VIM-205ENST00000485947 LONP1P36776 959 aaKnown RBP18.98■□□□□ 0.63
VIM-205ENST00000485947 PSMC5P62195 406 aa18.98■□□□□ 0.63
VIM-205ENST00000485947 TBC1D8BQ0IIM8 1120 aa18.98■□□□□ 0.63
VIM-205ENST00000485947 TMEM62Q0P6H9 643 aa18.98■□□□□ 0.63
VIM-205ENST00000485947 TARBP2Q15633 366 aaKnown RBP18.98■□□□□ 0.63
VIM-205ENST00000485947 CALCRLQ16602 461 aa18.98■□□□□ 0.63
VIM-205ENST00000485947 PTPROQ16827 1216 aa18.98■□□□□ 0.63
VIM-205ENST00000485947 RESP18Q5W5W9 173 aa18.98■□□□□ 0.63
VIM-205ENST00000485947 EFCAB12Q6NXP0 572 aa18.98■□□□□ 0.63
VIM-205ENST00000485947 POTEDQ86YR6 584 aa18.98■□□□□ 0.63
VIM-205ENST00000485947 CRIPAKQ8N1N5 446 aa18.98■□□□□ 0.63
VIM-205ENST00000485947 FIBCD1Q8N539 461 aa18.98■□□□□ 0.63
VIM-205ENST00000485947 FBXO22Q8NEZ5 403 aa18.98■□□□□ 0.63
VIM-205ENST00000485947 ZNF689Q96CS4 500 aaPredicted RBP18.98■□□□□ 0.63
VIM-205ENST00000485947 JPH2Q9BR39 696 aaPredicted RBP18.98■□□□□ 0.63
VIM-205ENST00000485947 ANP32EQ9BTT0 268 aa18.98■□□□□ 0.63
VIM-205ENST00000485947 TMEM60Q9H2L4 133 aa18.98■□□□□ 0.63
VIM-205ENST00000485947 RC3H2Q9HBD1 1191 aaKnown RBP18.98■□□□□ 0.63
VIM-205ENST00000485947 C5orf67F2Z3F1 127 aa18.97■□□□□ 0.63
VIM-205ENST00000485947 RFXAPO00287 272 aa18.97■□□□□ 0.63
VIM-205ENST00000485947 SLC37A4O43826 429 aa18.97■□□□□ 0.63
VIM-205ENST00000485947 GPR32O75388 356 aa18.97■□□□□ 0.63
VIM-205ENST00000485947 DGKIO75912 1065 aa18.97■□□□□ 0.63
VIM-205ENST00000485947 MRPS5P82675 430 aaKnown RBP18.97■□□□□ 0.63
VIM-205ENST00000485947 EPC2Q52LR7 807 aa18.97■□□□□ 0.63
VIM-205ENST00000485947 DTHD1Q6ZMT9 781 aa18.97■□□□□ 0.63
VIM-205ENST00000485947 FSIP1Q8NA03 581 aa18.97■□□□□ 0.63
VIM-205ENST00000485947 PPM1EQ8WY54 764 aa18.97■□□□□ 0.63
VIM-205ENST00000485947 CLP1Q92989 425 aaKnown RBP18.97■□□□□ 0.63
VIM-205ENST00000485947 MTMR9Q96QG7 549 aa18.97■□□□□ 0.63
VIM-205ENST00000485947 ERVK-5Q9HDB9 667 aa18.97■□□□□ 0.63
VIM-205ENST00000485947 FAM13BQ9NYF5 915 aa18.97■□□□□ 0.63
VIM-205ENST00000485947 ADGRA3Q8IWK6 1321 aa18.97■□□□□ 0.63
VIM-205ENST00000485947 TTC3P53804 2025 aa18.96■□□□□ 0.63
VIM-205ENST00000485947 H3BNC9 293 aa18.96■□□□□ 0.63
VIM-205ENST00000485947 MARCH6O60337 910 aa18.96■□□□□ 0.63
VIM-205ENST00000485947 P4HBP07237 508 aaKnown RBP18.96■□□□□ 0.63
VIM-205ENST00000485947 QARSP47897 775 aaKnown RBP18.96■□□□□ 0.63
VIM-205ENST00000485947 DNM2P50570 870 aa18.96■□□□□ 0.63
VIM-205ENST00000485947 FAM160A1Q05DH4 1040 aa18.96■□□□□ 0.63
VIM-205ENST00000485947 CCDC85BQ15834 202 aaPredicted RBP18.96■□□□□ 0.63
VIM-205ENST00000485947 TMEM266Q2M3C6 531 aa18.96■□□□□ 0.63
VIM-205ENST00000485947 SHC4Q6S5L8 630 aa18.96■□□□□ 0.63
VIM-205ENST00000485947 SLC24A5Q71RS6 500 aa18.96■□□□□ 0.63
VIM-205ENST00000485947 RTN4RL1Q86UN2 441 aaPredicted RBP18.96■□□□□ 0.63
VIM-205ENST00000485947 TMEM192Q8IY95 271 aa18.96■□□□□ 0.63
VIM-205ENST00000485947 CMTR2Q8IYT2 770 aaKnown RBP18.96■□□□□ 0.63
VIM-205ENST00000485947 AK8Q96MA6 479 aa18.96■□□□□ 0.63
VIM-205ENST00000485947 CLIC6Q96NY7 704 aa18.96■□□□□ 0.63
VIM-205ENST00000485947 ASB2Q96Q27 587 aa18.96■□□□□ 0.63
VIM-205ENST00000485947 PLVAPQ9BX97 442 aa18.96■□□□□ 0.63
VIM-205ENST00000485947 CSRNP2Q9H175 543 aa18.96■□□□□ 0.63
VIM-205ENST00000485947 RGS18Q9NS28 235 aa18.96■□□□□ 0.63
VIM-205ENST00000485947 DDX19AQ9NUU7 478 aaKnown RBP18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms