RNA–Protein interactions for RNA: ENST00000474412.1

VPS50-211, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-211ENST00000474412 ANKRD23Q86SG2 305 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 CLASRPQ8N2M8 674 aaKnown RBP8.4□□□□□ -1.06
VPS50-211ENST00000474412 SDR42E1Q8WUS8 393 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 RNF141Q8WVD5 230 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 UBE2FQ969M7 185 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 ERO1AQ96HE7 468 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 EAF1Q96JC9 268 aaPredicted RBP8.4□□□□□ -1.06
VPS50-211ENST00000474412 Q96M66 194 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 CRBNQ96SW2 442 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 NOL10Q9BSC4 688 aaKnown RBP8.4□□□□□ -1.06
VPS50-211ENST00000474412 BOLA2Q9H3K6 86 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 CARS2Q9HA77 564 aaKnown RBP8.4□□□□□ -1.06
VPS50-211ENST00000474412 PTPN22Q9Y2R2 807 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 LRRC37A2A6NM11 1700 aa8.4□□□□□ -1.07
VPS50-211ENST00000474412 MYH6P13533 1939 aa8.39□□□□□ -1.07
VPS50-211ENST00000474412 SLC22A31A6NKX4 558 aa8.39□□□□□ -1.07
VPS50-211ENST00000474412 CTNND1O60716 968 aaKnown RBP8.39□□□□□ -1.07
VPS50-211ENST00000474412 IFIT2P09913 472 aaKnown RBP8.39□□□□□ -1.07
VPS50-211ENST00000474412 CYP2D6P10635 497 aa8.39□□□□□ -1.07
VPS50-211ENST00000474412 HMGCS2P54868 508 aa8.39□□□□□ -1.07
VPS50-211ENST00000474412 HSP90AB4PQ58FF6 505 aa8.39□□□□□ -1.07
VPS50-211ENST00000474412 C17orf99Q6UX52 265 aa8.39□□□□□ -1.07
VPS50-211ENST00000474412 SLITRK4Q8IW52 837 aa8.39□□□□□ -1.07
VPS50-211ENST00000474412 REXO1Q8N1G1 1221 aaKnown RBP8.39□□□□□ -1.07
VPS50-211ENST00000474412 LRRN4CLQ8ND94 238 aa8.39□□□□□ -1.07
VPS50-211ENST00000474412 OTUD7AQ8TE49 926 aaPredicted RBP8.39□□□□□ -1.07
VPS50-211ENST00000474412 KREMEN1Q96MU8 473 aa8.39□□□□□ -1.07
VPS50-211ENST00000474412 TRIT1Q9H3H1 467 aaKnown RBP8.39□□□□□ -1.07
VPS50-211ENST00000474412 EHMT1Q9H9B1 1298 aa8.39□□□□□ -1.07
VPS50-211ENST00000474412 LMCD1Q9NZU5 365 aa8.39□□□□□ -1.07
VPS50-211ENST00000474412 ZBTB21Q9ULJ3 1066 aa8.39□□□□□ -1.07
VPS50-211ENST00000474412 SMCHD1A6NHR9 2005 aa8.39□□□□□ -1.07
VPS50-211ENST00000474412 CYP2D7A0A087X1C5 515 aa8.38□□□□□ -1.07
VPS50-211ENST00000474412 BIN1O00499 593 aa8.38□□□□□ -1.07
VPS50-211ENST00000474412 RGS13O14921 159 aa8.38□□□□□ -1.07
VPS50-211ENST00000474412 PRKAB2O43741 272 aa8.38□□□□□ -1.07
VPS50-211ENST00000474412 RAB11FIP3O75154 756 aa8.38□□□□□ -1.07
VPS50-211ENST00000474412 BAG3O95817 575 aa8.38□□□□□ -1.07
VPS50-211ENST00000474412 PLCD1P51178 756 aa8.38□□□□□ -1.07
VPS50-211ENST00000474412 MAP3K12Q12852 859 aa8.38□□□□□ -1.07
VPS50-211ENST00000474412 SPP2Q13103 211 aa8.38□□□□□ -1.07
VPS50-211ENST00000474412 PKN2Q16513 984 aaKnown RBP8.38□□□□□ -1.07
VPS50-211ENST00000474412 SLC44A5Q8NCS7 719 aa8.38□□□□□ -1.07
VPS50-211ENST00000474412 SH3TC2Q8TF17 1288 aa8.38□□□□□ -1.07
VPS50-211ENST00000474412 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.38□□□□□ -1.07
VPS50-211ENST00000474412 ASPNQ9BXN1 380 aa8.38□□□□□ -1.07
VPS50-211ENST00000474412 KRTAP4-8Q9BYQ9 185 aa8.38□□□□□ -1.07
VPS50-211ENST00000474412 LRRCC1Q9C099 1032 aa8.38□□□□□ -1.07
VPS50-211ENST00000474412 ARMT1Q9H993 441 aa8.38□□□□□ -1.07
VPS50-211ENST00000474412 ZCCHC17Q9NP64 241 aaKnown RBP8.38□□□□□ -1.07
VPS50-211ENST00000474412 PAG1Q9NWQ8 432 aa8.38□□□□□ -1.07
VPS50-211ENST00000474412 HERC5Q9UII4 1024 aaKnown RBP8.38□□□□□ -1.07
VPS50-211ENST00000474412 DDX41Q9UJV9 622 aaKnown RBP8.38□□□□□ -1.07
VPS50-211ENST00000474412 MYPNQ86TC9 1320 aa8.37□□□□□ -1.07
VPS50-211ENST00000474412 MKI67P46013 3256 aaKnown RBP8.37□□□□□ -1.07
VPS50-211ENST00000474412 CXCL11O14625 94 aa8.37□□□□□ -1.07
VPS50-211ENST00000474412 MBD4O95243 580 aa8.37□□□□□ -1.07
VPS50-211ENST00000474412 MAP4K4O95819 1239 aaPredicted RBP8.37□□□□□ -1.07
VPS50-211ENST00000474412 JUNBP17275 347 aaPredicted RBP8.37□□□□□ -1.07
VPS50-211ENST00000474412 SHMT1P34896 483 aa8.37□□□□□ -1.07
VPS50-211ENST00000474412 ADD2P35612 726 aa8.37□□□□□ -1.07
VPS50-211ENST00000474412 PRKCZQ05513 592 aa8.37□□□□□ -1.07
VPS50-211ENST00000474412 ZYXQ15942 572 aaKnown RBP8.37□□□□□ -1.07
VPS50-211ENST00000474412 SLC9C2Q5TAH2 1124 aa8.37□□□□□ -1.07
VPS50-211ENST00000474412 METTL16Q86W50 562 aaKnown RBP8.37□□□□□ -1.07
VPS50-211ENST00000474412 CRACR2BQ8N4Y2 399 aaPredicted RBP8.37□□□□□ -1.07
VPS50-211ENST00000474412 DTWD2Q8NBA8 298 aa8.37□□□□□ -1.07
VPS50-211ENST00000474412 ZNF333Q96JL9 665 aa8.37□□□□□ -1.07
VPS50-211ENST00000474412 PARK7Q99497 189 aaKnown RBP8.37□□□□□ -1.07
VPS50-211ENST00000474412 HAUS7Q99871 368 aa8.37□□□□□ -1.07
VPS50-211ENST00000474412 GPATCH2Q9NW75 528 aa8.37□□□□□ -1.07
VPS50-211ENST00000474412 PI4KBQ9UBF8 816 aa8.37□□□□□ -1.07
VPS50-211ENST00000474412 GABRQQ9UN88 632 aa8.37□□□□□ -1.07
VPS50-211ENST00000474412 AGTPBP1Q9UPW5 1226 aa8.37□□□□□ -1.07
VPS50-211ENST00000474412 GH2P01242 217 aa8.36□□□□□ -1.07
VPS50-211ENST00000474412 HLA-DOAP06340 250 aa8.36□□□□□ -1.07
VPS50-211ENST00000474412 ITGB5P18084 799 aa8.36□□□□□ -1.07
VPS50-211ENST00000474412 ATP5JP18859 108 aa8.36□□□□□ -1.07
VPS50-211ENST00000474412 PSMC4P43686 418 aa8.36□□□□□ -1.07
VPS50-211ENST00000474412 RACK1P63244 317 aaKnown RBP8.36□□□□□ -1.07
VPS50-211ENST00000474412 LRRFIP1Q32MZ4 808 aaKnown RBP8.36□□□□□ -1.07
VPS50-211ENST00000474412 ZNF654Q8IZM8 581 aa8.36□□□□□ -1.07
VPS50-211ENST00000474412 ANKRD13CQ8N6S4 541 aa8.36□□□□□ -1.07
VPS50-211ENST00000474412 TMEM40Q8WWA1 233 aa8.36□□□□□ -1.07
VPS50-211ENST00000474412 ARMC5Q96C12 935 aa8.36□□□□□ -1.07
VPS50-211ENST00000474412 ATG4CQ96DT6 458 aa8.36□□□□□ -1.07
VPS50-211ENST00000474412 DYNLL2Q96FJ2 89 aa8.36□□□□□ -1.07
VPS50-211ENST00000474412 ASIC4Q96FT7 647 aa8.36□□□□□ -1.07
VPS50-211ENST00000474412 DHX36Q9H2U1 1008 aaKnown RBP8.36□□□□□ -1.07
VPS50-211ENST00000474412 DCTPP1Q9H773 170 aa8.36□□□□□ -1.07
VPS50-211ENST00000474412 DCP1AQ9NPI6 582 aaPredicted RBP8.36□□□□□ -1.07
VPS50-211ENST00000474412 SALL3Q9BXA9 1300 aa8.35□□□□□ -1.07
VPS50-211ENST00000474412 LRRN2O75325 713 aa8.35□□□□□ -1.07
VPS50-211ENST00000474412 TPP2P29144 1249 aaPredicted RBP8.35□□□□□ -1.07
VPS50-211ENST00000474412 GUCY1A2P33402 732 aa8.35□□□□□ -1.07
VPS50-211ENST00000474412 RNF4P78317 190 aa8.35□□□□□ -1.07
VPS50-211ENST00000474412 GABPAQ06546 454 aa8.35□□□□□ -1.07
VPS50-211ENST00000474412 TTF1Q15361 905 aaPredicted RBP8.35□□□□□ -1.07
VPS50-211ENST00000474412 SLC9C1Q4G0N8 1177 aa8.35□□□□□ -1.07
VPS50-211ENST00000474412 CDCP2Q5VXM1 449 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms