RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SERPING1P05155 500 aa14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 PON1P27169 355 aa14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 DMP1Q13316 513 aaPredicted RBP14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 WHAMMP3Q1A5X7 153 aa14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 GJC2Q5T442 439 aaPredicted RBP14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 LRRC71Q8N4P6 559 aa14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 DCPSQ96C86 337 aaKnown RBP14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 AJAP1Q9UKB5 411 aaPredicted RBP14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 NFU1Q9UMS0 254 aa14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 LRP5O75197 1615 aa14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 SPOPO43791 374 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 EVI5O60447 810 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 TLR2O60603 784 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 P4HBP07237 508 aaKnown RBP14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 LIG4P49917 911 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 CASP8Q14790 479 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 IQCEQ6IPM2 695 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 PAXIP1Q6ZW49 1069 aaPredicted RBP14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 HDXQ7Z353 690 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 ZNF571Q7Z3V5 609 aaPredicted RBP14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 NLRP4Q96MN2 994 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 CEP72Q9P209 647 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 TUBB4AP04350 444 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 CLMNQ96JQ2 1002 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 RBM12Q9NTZ6 932 aaKnown RBP14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 MYH8P13535 1937 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 GNA14O95837 355 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 ICAM1P05362 532 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 PLA2G4AP47712 749 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 FSTL1Q12841 308 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 EPHA7Q15375 998 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 TRADDQ15628 312 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 GPR162Q16538 588 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 Q3C1V9 767 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 CCDC50Q8IVM0 306 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 TRIM59Q8IWR1 403 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 CCDC170Q8IYT3 715 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 ANKZF1Q9H8Y5 726 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 AGPAT3Q9NRZ7 376 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 VAV3Q9UKW4 847 aa14.94□□□□□ -0.02
CCDC88A-211ENST00000471947 CYP26A1O43174 497 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 MXI1P50539 228 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 MRPS9P82933 396 aaKnown RBP14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 TAX1BP1Q86VP1 789 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 THNSL1Q8IYQ7 743 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 AGBL3Q8NEM8 1001 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 SLC20A1Q8WUM9 679 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 UBE2Q2Q8WVN8 375 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 CEP350Q5VT06 3117 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 KCNA3P22001 575 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 SNX1Q13596 522 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 SPIRE2Q8WWL2 714 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 TRPC6Q9Y210 931 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 POTEB2H3BUK9 544 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 FOXN3O00409 490 aaPredicted RBP14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 HEXIM1O94992 359 aaKnown RBP14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 TBC1D8O95759 1140 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 TRIP13Q15645 432 aaPredicted RBP14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 DEPTORQ8TB45 409 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 IFT74Q96LB3 600 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 PDCD2LQ9BRP1 358 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 TSGA10Q9BZW7 698 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 NRAPQ86VF7 1730 aa14.93□□□□□ -0.02
CCDC88A-211ENST00000471947 MYH10P35580 1976 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 PSMD10O75832 226 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 MYBL2P10244 700 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 MTM1Q13496 603 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 TRAPPC12Q8WVT3 735 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 MYH1P12882 1939 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 IGLV3-22A0A075B6J6 115 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 KRIT1O00522 736 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 SPIRE1Q08AE8 756 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 DAB2IPQ5VWQ8 1189 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 SPOPLQ6IQ16 392 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 UBLCP1Q8WVY7 318 aaPredicted RBP14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 ZBTB45Q96K62 511 aaPredicted RBP14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 INTS2Q9H0H0 1204 aaKnown RBP14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 ACBD3Q9H3P7 528 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 TAS2R14Q9NYV8 317 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 RSPH14Q9UHP6 348 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 JRKLQ9Y4A0 524 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 SLX4Q8IY92 1834 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 CNTNAP1P78357 1384 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 INO80B-WBP1J3KQ70 363 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 HGSO14964 777 aaPredicted RBP14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 TGFB1I1O43294 461 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 ATP2C2O75185 946 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 GJB1P08034 283 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 KCNJ6P48051 423 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 FMO5P49326 533 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 BACE1P56817 501 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 CFAP221Q4G0U5 840 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 KLHDC7AQ5VTJ3 777 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 AADACL2Q6P093 401 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 INO80BQ9C086 356 aaPredicted RBP14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 KCTD10Q9H3F6 313 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 CASZ1Q86V15 1759 aa14.92□□□□□ -0.02
CCDC88A-211ENST00000471947 CCDC88AQ3V6T2 1871 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 ASTN1O14525 1302 aa14.91□□□□□ -0.02
CCDC88A-211ENST00000471947 WDR46O15213 610 aaKnown RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms