RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 NUDT12Q9BQG2 462 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 JPH2Q9BR39 696 aaPredicted RBP10.48□□□□□ -0.73
HDAC3-205ENST00000469550 FAM153AQ9UHL3 310 aa10.48□□□□□ -0.73
HDAC3-205ENST00000469550 GOLGA6L7A0A1B0GV03 622 aa10.47□□□□□ -0.73
HDAC3-205ENST00000469550 CCDC194A0A1B0GVG4 234 aa10.47□□□□□ -0.73
HDAC3-205ENST00000469550 BMP8BP34820 402 aa10.47□□□□□ -0.73
HDAC3-205ENST00000469550 ERVK-9P63128 1117 aa10.47□□□□□ -0.73
HDAC3-205ENST00000469550 GUCY2DQ02846 1103 aa10.47□□□□□ -0.73
HDAC3-205ENST00000469550 BIRC3Q13489 604 aa10.47□□□□□ -0.73
HDAC3-205ENST00000469550 MORN1Q5T089 497 aa10.47□□□□□ -0.73
HDAC3-205ENST00000469550 PDXDC1Q6P996 788 aa10.47□□□□□ -0.73
HDAC3-205ENST00000469550 POTEEQ6S8J3 1075 aa10.47□□□□□ -0.73
HDAC3-205ENST00000469550 LBX2Q6XYB7 198 aa10.47□□□□□ -0.73
HDAC3-205ENST00000469550 DIS3LQ8TF46 1054 aaKnown RBP10.47□□□□□ -0.73
HDAC3-205ENST00000469550 MTMR8Q96EF0 704 aa10.47□□□□□ -0.73
HDAC3-205ENST00000469550 KIAA1683Q9H0B3 1180 aa10.47□□□□□ -0.73
HDAC3-205ENST00000469550 TCP11L1Q9NUJ3 509 aa10.47□□□□□ -0.73
HDAC3-205ENST00000469550 SAP30BPQ9UHR5 308 aaKnown RBP10.47□□□□□ -0.73
HDAC3-205ENST00000469550 SERPINB13Q9UIV8 391 aa10.47□□□□□ -0.73
HDAC3-205ENST00000469550 MCM8Q9UJA3 840 aa10.47□□□□□ -0.73
HDAC3-205ENST00000469550 SALL4Q9UJQ4 1053 aa10.47□□□□□ -0.73
HDAC3-205ENST00000469550 PVALEFA0A1B0GWK0 134 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 GMNCA6NCL1 334 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 LRRC53A6NM62 1247 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 PP2D1A8MPX8 630 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 ADAMTS3O15072 1205 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 NCK2O43639 380 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 GH2P01242 217 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 TNNC1P63316 161 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 TRIM32Q13049 653 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 NAB2Q15742 525 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 CABP7Q86V35 215 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 GIMAP7Q8NHV1 300 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 CASKIN2Q8WXE0 1202 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 INPP4AQ96PE3 977 aaPredicted RBP10.46□□□□□ -0.73
HDAC3-205ENST00000469550 ISCUQ9H1K1 167 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 TMEM60Q9H2L4 133 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 SEMA6BQ9H3T3 888 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 EHD2Q9NZN4 543 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 TMEM59LQ9UK28 342 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 RABGAP1Q9Y3P9 1069 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 PCDHGC5Q9Y5F6 944 aa10.46□□□□□ -0.73
HDAC3-205ENST00000469550 C5orf60A6NFR6 353 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 GOLGA6L10A6NI86 522 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 USP17L15C9J2P7 530 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 USP17L13C9JLJ4 530 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 BHMG1C9JSJ3 638 aaPredicted RBP10.46□□□□□ -0.74
HDAC3-205ENST00000469550 USP17L11C9JVI0 530 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 USP17L18D6R9N7 530 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 USP17L22D6RA61 530 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 USP17L17D6RBQ6 530 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 USP17L19D6RCP7 530 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 USP17L20D6RJB6 530 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 EPHB6O15197 1021 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 PAEPP09466 180 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 PRKAR2AP13861 404 aaKnown RBP10.46□□□□□ -0.74
HDAC3-205ENST00000469550 PLCG1P19174 1290 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 CYP2B6P20813 491 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 RGS2P41220 211 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 GNAQP50148 359 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 CDR1P51861 262 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 MRPS25P82663 173 aaKnown RBP10.46□□□□□ -0.74
HDAC3-205ENST00000469550 LRRC63Q05C16 580 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 USP17L24Q0WX57 530 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 IFT88Q13099 833 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 ORC2Q13416 577 aaPredicted RBP10.46□□□□□ -0.74
HDAC3-205ENST00000469550 CUL1Q13616 776 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 LACTB2Q53H82 288 aaPredicted RBP10.46□□□□□ -0.74
HDAC3-205ENST00000469550 RNF187Q5TA31 235 aaPredicted RBP10.46□□□□□ -0.74
HDAC3-205ENST00000469550 MEI1Q5TIA1 1274 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 HGSNATQ68CP4 663 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 RUFY4Q6ZNE9 571 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 CCDC121Q6ZUS5 278 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 RRAGAQ7L523 313 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 GUF1Q8N442 669 aaKnown RBP10.46□□□□□ -0.74
HDAC3-205ENST00000469550 LRRC15Q8TF66 581 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 IFT81Q8WYA0 676 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 ANKS1AQ92625 1134 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 LRRC45Q96CN5 670 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 CYFIP2Q96F07 1278 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 APBA2Q99767 749 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 GDF15Q99988 308 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 C11orf49Q9H6J7 331 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 MMRN2Q9H8L6 949 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 SLC40A1Q9NP59 571 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 SMARCAL1Q9NZC9 954 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 PCDHA6Q9UN73 950 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 PCDHA8Q9Y5H6 950 aa10.46□□□□□ -0.74
HDAC3-205ENST00000469550 RLFQ13129 1914 aa10.45□□□□□ -0.74
HDAC3-205ENST00000469550 BTNL10A8MVZ5 291 aa10.45□□□□□ -0.74
HDAC3-205ENST00000469550 E7EVH7 732 aa10.45□□□□□ -0.74
HDAC3-205ENST00000469550 SMIM22K7EJ46 135 aa10.45□□□□□ -0.74
HDAC3-205ENST00000469550 TRAPPC3O43617 180 aa10.45□□□□□ -0.74
HDAC3-205ENST00000469550 CNMDO75829 334 aa10.45□□□□□ -0.74
HDAC3-205ENST00000469550 COL6A1P12109 1028 aa10.45□□□□□ -0.74
HDAC3-205ENST00000469550 ELF1P32519 619 aa10.45□□□□□ -0.74
HDAC3-205ENST00000469550 SHMT1P34896 483 aa10.45□□□□□ -0.74
HDAC3-205ENST00000469550 SEC24CP53992 1094 aa10.45□□□□□ -0.74
HDAC3-205ENST00000469550 ASIC1P78348 528 aa10.45□□□□□ -0.74
HDAC3-205ENST00000469550 GABPAQ06546 454 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms