RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 NOSTRINQ8IVI9 506 aa6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 ASB15Q8WXK1 588 aa6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 ERCC4Q92889 916 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 TMEM176AQ96HP8 235 aa6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 GBP4Q96PP9 640 aa6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 PLEKHG4BQ96PX9 1271 aa6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 OR10A5Q9H207 317 aa6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 OR10A2Q9H208 303 aa6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 SIRPGQ9P1W8 387 aa6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 Q9UFV3 132 aa6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 COL4A3BPQ9Y5P4 624 aa6.12□□□□□ -1.43
CCDC88A-210ENST00000468534 PLSCR1O15162 318 aa6.11□□□□□ -1.43
CCDC88A-210ENST00000468534 FOXP2O15409 715 aa6.11□□□□□ -1.43
CCDC88A-210ENST00000468534 BIRC2Q13490 618 aa6.11□□□□□ -1.43
CCDC88A-210ENST00000468534 TMEM132BQ14DG7 1078 aa6.11□□□□□ -1.43
CCDC88A-210ENST00000468534 RNF187Q5TA31 235 aaPredicted RBP6.11□□□□□ -1.43
CCDC88A-210ENST00000468534 KANK2Q63ZY3 851 aa6.11□□□□□ -1.43
CCDC88A-210ENST00000468534 MAMDC4Q6UXC1 1216 aa6.11□□□□□ -1.43
CCDC88A-210ENST00000468534 RPS6KC1Q96S38 1066 aa6.11□□□□□ -1.43
CCDC88A-210ENST00000468534 TLR9Q9NR96 1032 aa6.11□□□□□ -1.43
CCDC88A-210ENST00000468534 PLA2G3Q9NZ20 509 aa6.11□□□□□ -1.43
CCDC88A-210ENST00000468534 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.1□□□□□ -1.43
CCDC88A-210ENST00000468534 RASSF10A6NK89 507 aa6.1□□□□□ -1.43
CCDC88A-210ENST00000468534 HIBADHP31937 336 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-210ENST00000468534 TMEM200BQ69YZ2 307 aa6.1□□□□□ -1.43
CCDC88A-210ENST00000468534 TRIM68Q6AZZ1 485 aa6.1□□□□□ -1.43
CCDC88A-210ENST00000468534 GRAMD4Q6IC98 578 aa6.1□□□□□ -1.43
CCDC88A-210ENST00000468534 KRTAP5-3Q6L8H2 238 aa6.1□□□□□ -1.43
CCDC88A-210ENST00000468534 JAZF1Q86VZ6 243 aa6.1□□□□□ -1.43
CCDC88A-210ENST00000468534 GPR135Q8IZ08 494 aa6.1□□□□□ -1.43
CCDC88A-210ENST00000468534 RPUSD2Q8IZ73 545 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-210ENST00000468534 IL17DQ8TAD2 202 aa6.1□□□□□ -1.43
CCDC88A-210ENST00000468534 MAGEB10Q96LZ2 347 aaPredicted RBP6.1□□□□□ -1.43
CCDC88A-210ENST00000468534 PCDH12Q9NPG4 1184 aa6.1□□□□□ -1.43
CCDC88A-210ENST00000468534 KCNH7Q9NS40 1196 aa6.1□□□□□ -1.43
CCDC88A-210ENST00000468534 SWAP70Q9UH65 585 aa6.1□□□□□ -1.43
CCDC88A-210ENST00000468534 FBXO9Q9UK97 447 aaPredicted RBP6.1□□□□□ -1.43
CCDC88A-210ENST00000468534 FAM221BA6H8Z2 402 aa6.09□□□□□ -1.43
CCDC88A-210ENST00000468534 ACRV1P26436 265 aa6.09□□□□□ -1.43
CCDC88A-210ENST00000468534 TGFB2P61812 414 aa6.09□□□□□ -1.43
CCDC88A-210ENST00000468534 GRM7Q14831 915 aa6.09□□□□□ -1.43
CCDC88A-210ENST00000468534 NBPF6Q5VWK0 638 aa6.09□□□□□ -1.43
CCDC88A-210ENST00000468534 SGMS1Q86VZ5 419 aa6.09□□□□□ -1.43
CCDC88A-210ENST00000468534 SLC7A14Q8TBB6 771 aa6.09□□□□□ -1.43
CCDC88A-210ENST00000468534 NBPF4Q96M43 638 aa6.09□□□□□ -1.43
CCDC88A-210ENST00000468534 DEPDC7Q96QD5 511 aa6.09□□□□□ -1.43
CCDC88A-210ENST00000468534 CELF4Q9BZC1 486 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-210ENST00000468534 SFMBT1Q9UHJ3 866 aa6.09□□□□□ -1.43
CCDC88A-210ENST00000468534 G3BP2Q9UN86 482 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-210ENST00000468534 CCDC189A1A4V9 331 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 CFAP69A5D8W1 941 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 CAPN14A8MX76 684 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 EPB41L2O43491 1005 aaKnown RBP6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 NARSO43776 548 aaKnown RBP6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 ZNF500O60304 480 aaPredicted RBP6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 EFCAB14O75071 495 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 HIP1RO75146 1068 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 HSD3B2P26439 372 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 STAT3P40763 770 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 EVA1CP58658 441 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 HHEXQ03014 270 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 RASA3Q14644 834 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 LONRF2Q1L5Z9 754 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 ZNF280DQ6N043 979 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 OVCH1Q7RTY7 1134 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 D2HGDHQ8N465 521 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 SHCBP1Q8NEM2 672 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 STAG1Q8WVM7 1258 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 ZSWIM4Q9H7M6 989 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 SPC25Q9HBM1 224 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 SNTG2Q9NY99 539 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 MAGEL2Q9UJ55 1249 aa6.08□□□□□ -1.44
CCDC88A-210ENST00000468534 SLC12A8A0AV02 714 aa6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 SLC26A4O43511 780 aa6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 PRC1O43663 620 aa6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 KRT37O76014 449 aa6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 S100BP04271 92 aaPredicted RBP6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 MCM7P33993 719 aa6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 ADAM15Q13444 863 aa6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 BMS1Q14692 1282 aaKnown RBP6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 ACAP1Q15027 740 aa6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 PCGF5Q86SE9 256 aa6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 GSTCDQ8NEC7 633 aa6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 CALML6Q8TD86 181 aa6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 NEU4Q8WWR8 484 aaPredicted RBP6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 SCLYQ96I15 445 aa6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 DNAJC7Q99615 494 aa6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 TRIM8Q9BZR9 551 aa6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 IFT57Q9NWB7 429 aa6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 DDX56Q9NY93 547 aaKnown RBP6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 ASB1Q9Y576 335 aa6.07□□□□□ -1.44
CCDC88A-210ENST00000468534 APEX1P27695 318 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 COPB2P35606 906 aa6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 IRF9Q00978 393 aa6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 HGFACQ04756 655 aa6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 RBL2Q08999 1139 aa6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 SERINC3Q13530 473 aa6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 GLIPR1L2Q4G1C9 344 aa6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 CATSPEREQ5SY80 951 aa6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 BRAPQ7Z569 592 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms