RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 BRMS1Q9HCU9 246 aa21.28■■□□□ 1
VARS-220ENST00000461874 ALG13Q9NP73 1137 aaKnown RBP21.28■■□□□ 1
VARS-220ENST00000461874 TMEM161AQ9NX61 479 aa21.28■■□□□ 1
VARS-220ENST00000461874 FAM205CA6NFA0 338 aa21.27■■□□□ 1
VARS-220ENST00000461874 JAK2O60674 1132 aa21.27■■□□□ 1
VARS-220ENST00000461874 MMP1P03956 469 aa21.27■■□□□ 1
VARS-220ENST00000461874 ITGB1P05556 798 aa21.27■■□□□ 1
VARS-220ENST00000461874 QARSP47897 775 aaKnown RBP21.27■■□□□ 1
VARS-220ENST00000461874 CDC42EP1Q00587 391 aa21.27■■□□□ 1
VARS-220ENST00000461874 CAMK1Q14012 370 aa21.27■■□□□ 1
VARS-220ENST00000461874 KLHL23Q8NBE8 558 aa21.27■■□□□ 1
VARS-220ENST00000461874 NEK9Q8TD19 979 aa21.27■■□□□ 1
VARS-220ENST00000461874 PABPC5Q96DU9 382 aaKnown RBP21.27■■□□□ 1
VARS-220ENST00000461874 SCLT1Q96NL6 688 aa21.27■■□□□ 1
VARS-220ENST00000461874 ATP6V0A4Q9HBG4 840 aa21.27■■□□□ 1
VARS-220ENST00000461874 TBKBP1A7MCY6 615 aa21.26■□□□□ 0.99
VARS-220ENST00000461874 NCK2O43639 380 aa21.26■□□□□ 0.99
VARS-220ENST00000461874 MARCH6O60337 910 aa21.26■□□□□ 0.99
VARS-220ENST00000461874 MAFO75444 373 aaPredicted RBP21.26■□□□□ 0.99
VARS-220ENST00000461874 P4HBP07237 508 aaKnown RBP21.26■□□□□ 0.99
VARS-220ENST00000461874 ZSCAN20P17040 1043 aaPredicted RBP21.26■□□□□ 0.99
VARS-220ENST00000461874 DNM2P50570 870 aa21.26■□□□□ 0.99
VARS-220ENST00000461874 POTEDQ86YR6 584 aa21.26■□□□□ 0.99
VARS-220ENST00000461874 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.26■□□□□ 0.99
VARS-220ENST00000461874 SPPL3Q8TCT6 385 aa21.26■□□□□ 0.99
VARS-220ENST00000461874 NLRP7Q8WX94 980 aa21.26■□□□□ 0.99
VARS-220ENST00000461874 DKC1O60832 514 aaKnown RBP eCLIP21.25■□□□□ 0.99
VARS-220ENST00000461874 FGFR1P11362 822 aa21.25■□□□□ 0.99
VARS-220ENST00000461874 DNAJB1P25685 340 aa21.25■□□□□ 0.99
VARS-220ENST00000461874 ST3GAL1Q11201 340 aa21.25■□□□□ 0.99
VARS-220ENST00000461874 EPHA7Q15375 998 aa21.25■□□□□ 0.99
VARS-220ENST00000461874 GCOM2Q9BZD3 368 aaPredicted RBP21.25■□□□□ 0.99
VARS-220ENST00000461874 SUCLA2Q9P2R7 463 aaPredicted RBP21.25■□□□□ 0.99
VARS-220ENST00000461874 BTBD18B2RXH4 712 aa21.24■□□□□ 0.99
VARS-220ENST00000461874 BAG4O95429 457 aaKnown RBP21.24■□□□□ 0.99
VARS-220ENST00000461874 FGFR4P22455 802 aa21.24■□□□□ 0.99
VARS-220ENST00000461874 SPIRE1Q08AE8 756 aa21.24■□□□□ 0.99
VARS-220ENST00000461874 PLA2G4FQ68DD2 849 aa21.24■□□□□ 0.99
VARS-220ENST00000461874 SLFN12Q8IYM2 578 aa21.24■□□□□ 0.99
VARS-220ENST00000461874 JPH2Q9BR39 696 aaPredicted RBP21.24■□□□□ 0.99
VARS-220ENST00000461874 CYP26B1Q9NR63 512 aa21.24■□□□□ 0.99
VARS-220ENST00000461874 TYW1Q9NV66 732 aaKnown RBP21.24■□□□□ 0.99
VARS-220ENST00000461874 WRAP73Q9P2S5 460 aaPredicted RBP21.24■□□□□ 0.99
VARS-220ENST00000461874 LIMCH1Q9UPQ0 1083 aa21.24■□□□□ 0.99
VARS-220ENST00000461874 A0A087WZ62 844 aa21.23■□□□□ 0.99
VARS-220ENST00000461874 H3BQ06 376 aaPredicted RBP21.23■□□□□ 0.99
VARS-220ENST00000461874 CSDE1O75534 798 aaKnown RBP21.23■□□□□ 0.99
VARS-220ENST00000461874 NPEPPSP55786 919 aa21.23■□□□□ 0.99
VARS-220ENST00000461874 HYAL1Q12794 435 aa21.23■□□□□ 0.99
VARS-220ENST00000461874 TRIM29Q14134 588 aa21.23■□□□□ 0.99
VARS-220ENST00000461874 CTC1Q2NKJ3 1217 aa21.23■□□□□ 0.99
VARS-220ENST00000461874 PUS10Q3MIT2 529 aaKnown RBP21.23■□□□□ 0.99
VARS-220ENST00000461874 SPOUT1Q5T280 376 aaKnown RBP21.23■□□□□ 0.99
VARS-220ENST00000461874 PTCRAQ6ISU1 281 aaPredicted RBP21.23■□□□□ 0.99
VARS-220ENST00000461874 EP400NLQ6ZTU2 488 aa21.23■□□□□ 0.99
VARS-220ENST00000461874 ZNF410Q86VK4 478 aa21.23■□□□□ 0.99
VARS-220ENST00000461874 ECHDC2Q86YB7 292 aa21.23■□□□□ 0.99
VARS-220ENST00000461874 C4orf19Q8IY42 314 aa21.23■□□□□ 0.99
VARS-220ENST00000461874 DIS3L2Q8IYB7 885 aaKnown RBP21.23■□□□□ 0.99
VARS-220ENST00000461874 POF1BQ8WVV4 589 aa21.23■□□□□ 0.99
VARS-220ENST00000461874 FDXACB1Q9BRP7 624 aaPredicted RBP21.23■□□□□ 0.99
VARS-220ENST00000461874 TMEM117Q9H0C3 514 aa21.23■□□□□ 0.99
VARS-220ENST00000461874 AAASQ9NRG9 546 aa21.23■□□□□ 0.99
VARS-220ENST00000461874 RNF19AQ9NV58 838 aa21.23■□□□□ 0.99
VARS-220ENST00000461874 CLDND1Q9NY35 253 aa21.23■□□□□ 0.99
VARS-220ENST00000461874 PCDHB12Q9Y5F1 795 aa21.23■□□□□ 0.99
VARS-220ENST00000461874 A0A0U1RQF3 1178 aa21.22■□□□□ 0.99
VARS-220ENST00000461874 GRXCR2A6NFK2 248 aa21.22■□□□□ 0.99
VARS-220ENST00000461874 HOXA2O43364 376 aa21.22■□□□□ 0.99
VARS-220ENST00000461874 CSPG5O95196 566 aa21.22■□□□□ 0.99
VARS-220ENST00000461874 LTBRP36941 435 aa21.22■□□□□ 0.99
VARS-220ENST00000461874 FOSBP53539 338 aa21.22■□□□□ 0.99
VARS-220ENST00000461874 NCAPH2Q6IBW4 605 aa21.22■□□□□ 0.99
VARS-220ENST00000461874 RHPN2Q8IUC4 686 aa21.22■□□□□ 0.99
VARS-220ENST00000461874 ZNF579Q8NAF0 562 aaKnown RBP21.22■□□□□ 0.99
VARS-220ENST00000461874 CASD1Q96PB1 797 aa21.22■□□□□ 0.99
VARS-220ENST00000461874 LXNQ9BS40 222 aa21.22■□□□□ 0.99
VARS-220ENST00000461874 CWH43Q9H720 699 aa21.22■□□□□ 0.99
VARS-220ENST00000461874 RGL1Q9NZL6 768 aa21.22■□□□□ 0.99
VARS-220ENST00000461874 HCSTQ9UBK5 93 aa21.22■□□□□ 0.99
VARS-220ENST00000461874 PPME1Q9Y570 386 aa21.22■□□□□ 0.99
VARS-220ENST00000461874 IRS1P35568 1242 aa21.21■□□□□ 0.99
VARS-220ENST00000461874 KSR1Q8IVT5 923 aa21.21■□□□□ 0.99
VARS-220ENST00000461874 EXOC8Q8IYI6 725 aa21.21■□□□□ 0.99
VARS-220ENST00000461874 COLGALT1Q8NBJ5 622 aa21.21■□□□□ 0.99
VARS-220ENST00000461874 SLC7A3Q8WY07 619 aa21.21■□□□□ 0.99
VARS-220ENST00000461874 DYDC2Q96IM9 177 aa21.21■□□□□ 0.99
VARS-220ENST00000461874 CEP170P1Q96L14 293 aa21.21■□□□□ 0.99
VARS-220ENST00000461874 INO80BQ9C086 356 aaPredicted RBP21.21■□□□□ 0.99
VARS-220ENST00000461874 DHX33Q9H6R0 707 aaKnown RBP21.21■□□□□ 0.99
VARS-220ENST00000461874 ZSWIM4Q9H7M6 989 aa21.21■□□□□ 0.99
VARS-220ENST00000461874 CHST12Q9NRB3 414 aa21.21■□□□□ 0.99
VARS-220ENST00000461874 DACT1Q9NYF0 836 aa21.21■□□□□ 0.99
VARS-220ENST00000461874 EOMESO95936 686 aa21.2■□□□□ 0.98
VARS-220ENST00000461874 IL9P15248 144 aa21.2■□□□□ 0.98
VARS-220ENST00000461874 SFPQP23246 707 aaKnown RBP eCLIP21.2■□□□□ 0.98
VARS-220ENST00000461874 YWHABP31946 246 aaKnown RBP21.2■□□□□ 0.98
VARS-220ENST00000461874 GTF2F1P35269 517 aaKnown RBP eCLIP21.2■□□□□ 0.98
VARS-220ENST00000461874 UBE3AQ05086 875 aa21.2■□□□□ 0.98
VARS-220ENST00000461874 CTTNQ14247 550 aaKnown RBP21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms