RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 ZDHHC15Q96MV8 337 aa12.59□□□□□ -0.39
NPHP4-204ENST00000460696 RUSC1Q9BVN2 902 aa12.59□□□□□ -0.39
NPHP4-204ENST00000460696 EPHB6O15197 1021 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 IFNB1P01574 187 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 WDR59Q6PJI9 974 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 NCAPG2Q86XI2 1143 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 MPHOSPH6Q99547 160 aaKnown RBP12.58□□□□□ -0.4
NPHP4-204ENST00000460696 MMTAG2Q9BU76 263 aaKnown RBP12.58□□□□□ -0.4
NPHP4-204ENST00000460696 PACSIN1Q9BY11 444 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 AZI2Q9H6S1 392 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 AMACRQ9UHK6 382 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 MYO9BQ13459 2157 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 EMSYQ7Z589 1322 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 H3BQF6 201 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 HTRA3P83110 453 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 INTS8Q75QN2 995 aaKnown RBP12.58□□□□□ -0.4
NPHP4-204ENST00000460696 PRPF38AQ8NAV1 312 aaKnown RBP12.58□□□□□ -0.4
NPHP4-204ENST00000460696 ATP6V0A1Q93050 837 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 MTMR9Q96QG7 549 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 SAMD15Q9P1V8 674 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 TARSL2A2RTX5 802 aaKnown RBP12.58□□□□□ -0.4
NPHP4-204ENST00000460696 LRRIQ3A6PVS8 624 aaPredicted RBP12.58□□□□□ -0.4
NPHP4-204ENST00000460696 MYO1FO00160 1098 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 TBX3O15119 743 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 SLCO1A2P46721 670 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 QARSP47897 775 aaKnown RBP12.58□□□□□ -0.4
NPHP4-204ENST00000460696 FIGNQ5HY92 759 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 ALS2CLQ60I27 953 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 SEPT14Q6ZU15 432 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 MOB2Q70IA6 237 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 SYT2Q8N9I0 419 aaPredicted RBP12.58□□□□□ -0.4
NPHP4-204ENST00000460696 INTS2Q9H0H0 1204 aaKnown RBP12.58□□□□□ -0.4
NPHP4-204ENST00000460696 PODXL2Q9NZ53 605 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 AGTPBP1Q9UPW5 1226 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 SNX24Q9Y343 169 aa12.58□□□□□ -0.4
NPHP4-204ENST00000460696 EVI5O60447 810 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 GAS8O95995 478 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 P4HBP07237 508 aaKnown RBP12.57□□□□□ -0.4
NPHP4-204ENST00000460696 PBX1P40424 430 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 SHROOM1Q2M3G4 852 aaPredicted RBP12.57□□□□□ -0.4
NPHP4-204ENST00000460696 SH2D3CQ8N5H7 860 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 MSANTD4Q8NCY6 345 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 ZNF507Q8TCN5 953 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 HNRNPLLQ8WVV9 542 aaKnown RBP12.57□□□□□ -0.4
NPHP4-204ENST00000460696 AGBL1Q96MI9 1066 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 NSRP1Q9H0G5 558 aaKnown RBP12.57□□□□□ -0.4
NPHP4-204ENST00000460696 FEM1BQ9UK73 627 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 PLAAQ9Y263 795 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 PITPNM2Q9BZ72 1349 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 ATP2A1O14983 1001 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 BUB1BO60566 1050 aaPredicted RBP12.57□□□□□ -0.4
NPHP4-204ENST00000460696 ENTPD3O75355 529 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 NSFP46459 744 aaKnown RBP12.57□□□□□ -0.4
NPHP4-204ENST00000460696 CARSP49589 748 aaKnown RBP12.57□□□□□ -0.4
NPHP4-204ENST00000460696 GALCP54803 685 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 EPHA7Q15375 998 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 GLE1Q53GS7 698 aaKnown RBP12.57□□□□□ -0.4
NPHP4-204ENST00000460696 CAPN12Q6ZSI9 719 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 ANKRD42Q8N9B4 389 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 WHAMMQ8TF30 809 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 AS3MTQ9HBK9 375 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 NOVA2Q9UNW9 492 aaKnown RBP12.57□□□□□ -0.4
NPHP4-204ENST00000460696 IKBKGQ9Y6K9 419 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 GAKO14976 1311 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 RCCD1A6NED2 376 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 FTLP02792 175 aaPredicted RBP12.57□□□□□ -0.4
NPHP4-204ENST00000460696 ATF7P17544 494 aaPredicted RBP12.57□□□□□ -0.4
NPHP4-204ENST00000460696 NR1D1P20393 614 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 IFNAR2P48551 515 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 VAMP7P51809 220 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 GIT2Q14161 759 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 PPP2R5EQ16537 467 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 PAPD7Q5XG87 772 aaKnown RBP12.57□□□□□ -0.4
NPHP4-204ENST00000460696 KAZNQ674X7 775 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 RINT1Q6NUQ1 792 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 TAB3Q8N5C8 712 aaPredicted RBP12.57□□□□□ -0.4
NPHP4-204ENST00000460696 MTMR8Q96EF0 704 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 SERPINA10Q9UK55 444 aa12.57□□□□□ -0.4
NPHP4-204ENST00000460696 RGL2O15211 777 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 MAPK4P31152 587 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 HOXA10P31260 410 aaPredicted RBP12.56□□□□□ -0.4
NPHP4-204ENST00000460696 ADCY8P40145 1251 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 HAUS6Q7Z4H7 955 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 CEP57Q86XR8 500 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 PPM1EQ8WY54 764 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 HAS1Q92839 578 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 DNAJC17Q9NVM6 304 aaKnown RBP12.56□□□□□ -0.4
NPHP4-204ENST00000460696 SEL1LQ9UBV2 794 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 ZNF70Q9UC06 446 aaPredicted RBP12.56□□□□□ -0.4
NPHP4-204ENST00000460696 AKAP3O75969 853 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 ZRANB2O95218 330 aaKnown RBP eCLIP12.56□□□□□ -0.4
NPHP4-204ENST00000460696 SOX5P35711 763 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 DR1Q01658 176 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 KLHDC7AQ5VTJ3 777 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 PNMA8AQ86V59 439 aaPredicted RBP12.56□□□□□ -0.4
NPHP4-204ENST00000460696 FMO2Q99518 471 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 VCPKMTQ9H867 229 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 FAM114A2Q9NRY5 505 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 CHORDC1Q9UHD1 332 aaPredicted RBP12.56□□□□□ -0.4
NPHP4-204ENST00000460696 HPCAL4Q9UM19 191 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms