RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CEP104O60308 925 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 OPA1O60313 960 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 NMT2O60551 498 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 SKAP2O75563 359 aaPredicted RBP5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 STAMBPO95630 424 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 PCNAP12004 261 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 SCG2P13521 617 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 GCFC2P16383 781 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 GRIA2P42262 883 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 GUCY1B3Q02153 619 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 BNIP1Q12981 228 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 INPP5AQ14642 412 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 COG2Q14746 738 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 PROSER3Q2NL68 480 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 SV2CQ496J9 727 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 BTN2A1Q7KYR7 527 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 MAATS1Q7Z4T9 603 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 LRRC47Q8N1G4 583 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 TMCO5AQ8N6Q1 288 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 KIAA1524Q8TCG1 905 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 TCP11Q8WWU5 503 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 ANKRD7Q92527 254 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 TSGA13Q96PP4 275 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 PPP1R9BQ96SB3 815 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 PBX4Q9BYU1 374 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 MTFR1LQ9H019 292 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 MRPL46Q9H2W6 279 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 GRPEL1Q9HAV7 217 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 RGPD5Q99666 1765 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 CEP350Q5VT06 3117 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 ATP10DQ9P241 1426 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 A0A1W2PQU0 124 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 ENO4A6NNW6 628 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 RTCAO00442 366 aaKnown RBP5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 TOR1BO14657 336 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 SGSM2O43147 1006 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 EFSO43281 561 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 RTN2O75298 545 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 HSPA6P17066 643 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 SMPD1P17405 629 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 SOX18P35713 384 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 CAP2P40123 477 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 RANBP1P43487 201 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 ARPC4P59998 168 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 MRPS35P82673 323 aaKnown RBP5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 PCDH1Q08174 1060 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 SPEM2Q0P670 501 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 ZNF460Q14592 562 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 SF3B3Q15393 1217 aaKnown RBP5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 HIBCHQ6NVY1 386 aaPredicted RBP5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 PKN3Q6P5Z2 889 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 SYT10Q6XYQ8 523 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 DGLUCYQ7Z3D6 616 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 VN1R5Q7Z5H4 357 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 IFNL2Q8IZJ0 200 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 TTC39CQ8N584 583 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 GPT2Q8TD30 523 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 ACMSDQ8TDX5 336 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 ATG4CQ96DT6 458 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 DHRS4Q9BTZ2 278 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 RUSC1Q9BVN2 902 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 SLC12A5Q9H2X9 1139 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 C11orf16Q9NQ32 467 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 SMYD2Q9NRG4 433 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 SLC5A4Q9NY91 659 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 KLHL3Q9UH77 587 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 HERC5Q9UII4 1024 aaKnown RBP5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 FBXO10Q9UK96 956 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 MAPRE3Q9UPY8 281 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 TTLL3Q9Y4R7 772 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 BTAF1O14981 1849 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 UTRNP46939 3433 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 KDRP35968 1356 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 MAP3K5Q99683 1374 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 PIK3C2AO00443 1686 aa5.3□□□□□ -1.56
CCDC88A-209ENST00000456975 ZBED4O75132 1171 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 B3GALT4O96024 378 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 ARNTP27540 789 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 TMOD1P28289 359 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 MCM5P33992 734 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 SARSP49591 514 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 TUBA1BP68363 451 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 ZNF252P-AS1Q0IIN9 211 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 MOGSQ13724 837 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 LAMB3Q13751 1172 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 LAMC2Q13753 1193 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 INAQ16352 499 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 RPS26P11Q5JNZ5 115 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 WIPI1Q5MNZ9 446 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 TTC39AQ5SRH9 613 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 SWSAP1Q6NVH7 229 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 LVRNQ6Q4G3 990 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 MICALCLQ6ZW33 695 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 TUBA1AQ71U36 451 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 TAOK1Q7L7X3 1001 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 SLC44A2Q8IWA5 706 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 TCP11L2Q8N4U5 519 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 OR8H1Q8NGG4 311 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 GIMAP7Q8NHV1 300 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 RIN3Q8TB24 985 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms