RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 UPP2O95045 317 aa20.75■□□□□ 0.91
HMGA1-205ENST00000447654 FLT3P36888 993 aa20.75■□□□□ 0.91
HMGA1-205ENST00000447654 USP11P51784 963 aa20.75■□□□□ 0.91
HMGA1-205ENST00000447654 OCRLQ01968 901 aa20.75■□□□□ 0.91
HMGA1-205ENST00000447654 CNGA2Q16280 664 aa20.75■□□□□ 0.91
HMGA1-205ENST00000447654 STKLD1Q8NE28 680 aa20.75■□□□□ 0.91
HMGA1-205ENST00000447654 NEK9Q8TD19 979 aa20.75■□□□□ 0.91
HMGA1-205ENST00000447654 DYDC1Q8WWB3 177 aa20.75■□□□□ 0.91
HMGA1-205ENST00000447654 ZNF333Q96JL9 665 aa20.75■□□□□ 0.91
HMGA1-205ENST00000447654 FMO2Q99518 471 aa20.75■□□□□ 0.91
HMGA1-205ENST00000447654 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.75■□□□□ 0.917e-12■■■■□ 22.2
HMGA1-205ENST00000447654 AIPL1Q9NZN9 384 aa20.75■□□□□ 0.91
HMGA1-205ENST00000447654 STOML1Q9UBI4 398 aa20.75■□□□□ 0.91
HMGA1-205ENST00000447654 FTCDO95954 541 aa20.74■□□□□ 0.91
HMGA1-205ENST00000447654 GSTT1P30711 240 aa20.74■□□□□ 0.91
HMGA1-205ENST00000447654 EHHADHQ08426 723 aa20.74■□□□□ 0.91
HMGA1-205ENST00000447654 GSTA3Q16772 222 aa20.74■□□□□ 0.91
HMGA1-205ENST00000447654 DDX42Q86XP3 938 aaKnown RBP eCLIP20.74■□□□□ 0.91
HMGA1-205ENST00000447654 ANKRD13CQ8N6S4 541 aa20.74■□□□□ 0.91
HMGA1-205ENST00000447654 BAP1Q92560 729 aa20.74■□□□□ 0.91
HMGA1-205ENST00000447654 GRAMD1AQ96CP6 724 aa20.74■□□□□ 0.91
HMGA1-205ENST00000447654 SHISA4Q96DD7 197 aa20.74■□□□□ 0.91
HMGA1-205ENST00000447654 GBP5Q96PP8 586 aa20.74■□□□□ 0.91
HMGA1-205ENST00000447654 GALNT8Q9NY28 637 aa20.74■□□□□ 0.91
HMGA1-205ENST00000447654 TNKSO95271 1327 aa20.74■□□□□ 0.91
HMGA1-205ENST00000447654 LRRC53A6NM62 1247 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 USP17L12C9JPN9 530 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 USP17L21D6R901 530 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 DAPK3O43293 454 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 ECE2O60344 883 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 PTDSS1P48651 473 aaKnown RBP20.73■□□□□ 0.91
HMGA1-205ENST00000447654 GFPT1Q06210 699 aaPredicted RBP20.73■□□□□ 0.91
HMGA1-205ENST00000447654 PTGDRQ13258 359 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 MUM1Q2TAK8 710 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 SLC9C1Q4G0N8 1177 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 ZNF654Q8IZM8 581 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 UPF1Q92900 1129 aaKnown RBP eCLIP20.73■□□□□ 0.917e-23■■■■□ 19.4
HMGA1-205ENST00000447654 SLX1AQ9BQ83 275 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 ANKRD2Q9GZV1 360 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 MIS12Q9H081 205 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 DCLRE1BQ9H816 532 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 MAGEF1Q9HAY2 307 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 COMMD3-BMI1R4GMX3 469 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 MYH6P13533 1939 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.73■□□□□ 0.91
HMGA1-205ENST00000447654 NVLO15381 856 aaKnown RBP20.73■□□□□ 0.91
HMGA1-205ENST00000447654 KLRC4O43908 158 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 SHBGP04278 402 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 VHLP40337 213 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 PABPC4Q13310 644 aaKnown RBP eCLIP20.73■□□□□ 0.916e-22■■■■□ 23.3
HMGA1-205ENST00000447654 KPNB1Q14974 876 aaKnown RBP20.73■□□□□ 0.91
HMGA1-205ENST00000447654 GRIK5Q16478 980 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 VWA3BQ502W6 1294 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 C10orf76Q5T2E6 689 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 HGSNATQ68CP4 663 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 DENND2CQ68D51 928 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 SYCP3Q8IZU3 236 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 FITM2Q8N6M3 262 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 ENAHQ8N8S7 591 aaPredicted RBP20.73■□□□□ 0.91
HMGA1-205ENST00000447654 ANKS1AQ92625 1134 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 NUDCD1Q96RS6 583 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 NAP1L3Q99457 506 aaPredicted RBP20.73■□□□□ 0.91
HMGA1-205ENST00000447654 BRIP1Q9BX63 1249 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 ZCWPW1Q9H0M4 648 aa20.73■□□□□ 0.91
HMGA1-205ENST00000447654 RNF41Q9H4P4 317 aaPredicted RBP20.73■□□□□ 0.91
HMGA1-205ENST00000447654 DUOX1Q9NRD9 1551 aa20.72■□□□□ 0.91
HMGA1-205ENST00000447654 SERPING1P05155 500 aa20.72■□□□□ 0.91
HMGA1-205ENST00000447654 CYP2D6P10635 497 aa20.72■□□□□ 0.91
HMGA1-205ENST00000447654 FOXB2Q5VYV0 432 aa20.72■□□□□ 0.91
HMGA1-205ENST00000447654 RRAGAQ7L523 313 aa20.72■□□□□ 0.91
HMGA1-205ENST00000447654 RASGEF1CQ8N431 466 aa20.72■□□□□ 0.91
HMGA1-205ENST00000447654 UTP4Q969X6 686 aaKnown RBP20.72■□□□□ 0.91
HMGA1-205ENST00000447654 HAPLN3Q96S86 360 aa20.72■□□□□ 0.91
HMGA1-205ENST00000447654 ZMYND12Q9H0C1 365 aa20.72■□□□□ 0.91
HMGA1-205ENST00000447654 ETNK1Q9HBU6 452 aa20.72■□□□□ 0.91
HMGA1-205ENST00000447654 ZMYND8Q9ULU4 1186 aaPredicted RBP20.72■□□□□ 0.91
HMGA1-205ENST00000447654 ECEL1O95672 775 aa20.72■□□□□ 0.91
HMGA1-205ENST00000447654 EYA4O95677 639 aa20.72■□□□□ 0.91
HMGA1-205ENST00000447654 SPDYAQ5MJ70 313 aa20.72■□□□□ 0.91
HMGA1-205ENST00000447654 FANCBQ8NB91 859 aa20.72■□□□□ 0.91
HMGA1-205ENST00000447654 KLHL14Q9P2G3 628 aa20.72■□□□□ 0.91
HMGA1-205ENST00000447654 ATP8B3O60423 1300 aa20.71■□□□□ 0.91
HMGA1-205ENST00000447654 KCNK3O14649 394 aa20.71■□□□□ 0.91
HMGA1-205ENST00000447654 TMCC1O94876 653 aa20.71■□□□□ 0.91
HMGA1-205ENST00000447654 SLC4A8Q2Y0W8 1093 aa20.71■□□□□ 0.91
HMGA1-205ENST00000447654 PRR5LQ6MZQ0 368 aa20.71■□□□□ 0.91
HMGA1-205ENST00000447654 ZNF365Q70YC5 407 aa20.71■□□□□ 0.91
HMGA1-205ENST00000447654 DCP1AQ9NPI6 582 aaPredicted RBP20.71■□□□□ 0.91
HMGA1-205ENST00000447654 MAFGO15525 162 aa20.7■□□□□ 0.91
HMGA1-205ENST00000447654 NMT2O60551 498 aa20.7■□□□□ 0.91
HMGA1-205ENST00000447654 FGFR1OPO95684 399 aaKnown RBP20.7■□□□□ 0.91
HMGA1-205ENST00000447654 HOXA7P31268 230 aaPredicted RBP20.7■□□□□ 0.91
HMGA1-205ENST00000447654 SCNN1BP51168 640 aa20.7■□□□□ 0.91
HMGA1-205ENST00000447654 TMED1Q13445 227 aa20.7■□□□□ 0.91
HMGA1-205ENST00000447654 MFSD5Q6N075 450 aa20.7■□□□□ 0.91
HMGA1-205ENST00000447654 MAEAQ7L5Y9 396 aa20.7■□□□□ 0.91
HMGA1-205ENST00000447654 ESR2Q92731 530 aa20.7■□□□□ 0.91
HMGA1-205ENST00000447654 TNFRSF25Q93038 417 aa20.7■□□□□ 0.91
HMGA1-205ENST00000447654 NR1H4Q96RI1 486 aaPredicted RBP20.7■□□□□ 0.91
HMGA1-205ENST00000447654 USP20Q9Y2K6 914 aa20.7■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms