RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 BRINP1O60477 761 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 PRKD3O94806 890 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 CPEP16870 476 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 ZNF20P17024 532 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 LSSP48449 732 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 MEOX1P50221 254 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 KIF11P52732 1056 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 RAC3P60763 192 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 CD83Q01151 205 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 ARHGAP44Q17R89 818 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 RNF219Q5W0B1 726 aaPredicted RBP4.82□□□□□ -1.64
VPS41-207ENST00000439468 CXXC5Q7LFL8 322 aaKnown RBP4.82□□□□□ -1.64
VPS41-207ENST00000439468 HDGFL2Q7Z4V5 671 aaPredicted RBP4.82□□□□□ -1.64
VPS41-207ENST00000439468 PALM2Q8IXS6 379 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 CNTD1Q8N815 330 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 KIAA1958Q8N8K9 716 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 CALML6Q8TD86 181 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 DLG3Q92796 817 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 DVL3Q92997 716 aaPredicted RBP4.82□□□□□ -1.64
VPS41-207ENST00000439468 SMAD5Q99717 465 aaKnown RBP4.82□□□□□ -1.64
VPS41-207ENST00000439468 SSBP3Q9BWW4 388 aaPredicted RBP4.82□□□□□ -1.64
VPS41-207ENST00000439468 BTBD2Q9BX70 525 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 AMNQ9BXJ7 453 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 KIAA1683Q9H0B3 1180 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 MEGF9Q9H1U4 602 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 OR10A5Q9H207 317 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 C12orf65Q9H3J6 166 aaKnown RBP4.82□□□□□ -1.64
VPS41-207ENST00000439468 PCIF1Q9H4Z3 704 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 FAM184BQ9ULE4 1060 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 NR2E1Q9Y466 385 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 TCAF1Q9Y4C2 921 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 B3GALT1Q9Y5Z6 326 aa4.82□□□□□ -1.64
VPS41-207ENST00000439468 RASSF10A6NK89 507 aa4.81□□□□□ -1.64
VPS41-207ENST00000439468 H7C1D1 291 aa4.81□□□□□ -1.64
VPS41-207ENST00000439468 MPIG6BO95866 241 aa4.81□□□□□ -1.64
VPS41-207ENST00000439468 HMGB1P09429 215 aaKnown RBP4.81□□□□□ -1.64
VPS41-207ENST00000439468 ETV4P43268 484 aa4.81□□□□□ -1.64
VPS41-207ENST00000439468 ITKQ08881 620 aa4.81□□□□□ -1.64
VPS41-207ENST00000439468 MOGSQ13724 837 aa4.81□□□□□ -1.64
VPS41-207ENST00000439468 NOLC1Q14978 699 aaKnown RBP eCLIP4.81□□□□□ -1.64
VPS41-207ENST00000439468 BROXQ5VW32 411 aa4.81□□□□□ -1.64
VPS41-207ENST00000439468 IQSEC1Q6DN90 963 aa4.81□□□□□ -1.64
VPS41-207ENST00000439468 TAX1BP1Q86VP1 789 aa4.81□□□□□ -1.64
VPS41-207ENST00000439468 SPATS2Q86XZ4 545 aaKnown RBP4.81□□□□□ -1.64
VPS41-207ENST00000439468 CLRN3Q8NCR9 226 aa4.81□□□□□ -1.64
VPS41-207ENST00000439468 NEIL1Q96FI4 390 aaPredicted RBP4.81□□□□□ -1.64
VPS41-207ENST00000439468 SCYL1Q96KG9 808 aa4.81□□□□□ -1.64
VPS41-207ENST00000439468 KLC2Q9H0B6 622 aa4.81□□□□□ -1.64
VPS41-207ENST00000439468 SEC61A2Q9H9S3 476 aa4.81□□□□□ -1.64
VPS41-207ENST00000439468 TOMM22Q9NS69 142 aa4.81□□□□□ -1.64
VPS41-207ENST00000439468 ASB1Q9Y576 335 aa4.81□□□□□ -1.64
VPS41-207ENST00000439468 A0A0G2JNJ9 132 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 ALG1L2C9J202 215 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 CDC14BO60729 498 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 SDHAP31040 664 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 STAT5BP51692 787 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 ZNF174Q15697 407 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 RNF151Q2KHN1 245 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 HS1BP3Q53T59 392 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 CATSPEREQ5SY80 951 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 GRAMD4Q6IC98 578 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 ESRP1Q6NXG1 681 aaKnown RBP4.8□□□□□ -1.64
VPS41-207ENST00000439468 SH3RF3Q8TEJ3 882 aaPredicted RBP4.8□□□□□ -1.64
VPS41-207ENST00000439468 RTF1Q92541 710 aaKnown RBP4.8□□□□□ -1.64
VPS41-207ENST00000439468 SLC5A5Q92911 643 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 MTMR8Q96EF0 704 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 CDK5RAP1Q96SZ6 601 aaKnown RBP4.8□□□□□ -1.64
VPS41-207ENST00000439468 ASPSCR1Q9BZE9 553 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 ZDHHC5Q9C0B5 715 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 Q9UFV3 132 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 TRHDEQ9UKU6 1024 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 ZFR2Q9UPR6 939 aaKnown RBP4.8□□□□□ -1.64
VPS41-207ENST00000439468 JAG2Q9Y219 1238 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 MYRFQ9Y2G1 1151 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 THRAP3Q9Y2W1 955 aaKnown RBP4.8□□□□□ -1.64
VPS41-207ENST00000439468 SPO11Q9Y5K1 396 aa4.8□□□□□ -1.64
VPS41-207ENST00000439468 MUSKO15146 869 aa4.79□□□□□ -1.64
VPS41-207ENST00000439468 ZNF623O75123 536 aa4.79□□□□□ -1.64
VPS41-207ENST00000439468 APEX1P27695 318 aaKnown RBP4.79□□□□□ -1.64
VPS41-207ENST00000439468 SELENOPP49908 381 aa4.79□□□□□ -1.64
VPS41-207ENST00000439468 SMAD3P84022 425 aaKnown RBP4.79□□□□□ -1.64
VPS41-207ENST00000439468 EXOSC10Q01780 885 aaKnown RBP4.79□□□□□ -1.64
VPS41-207ENST00000439468 MAP3K12Q12852 859 aa4.79□□□□□ -1.64
VPS41-207ENST00000439468 STILQ15468 1287 aa4.79□□□□□ -1.64
VPS41-207ENST00000439468 TERF2Q15554 542 aa4.79□□□□□ -1.64
VPS41-207ENST00000439468 DDB1Q16531 1140 aa4.79□□□□□ -1.64
VPS41-207ENST00000439468 CC2D1AQ6P1N0 951 aaPredicted RBP4.79□□□□□ -1.64
VPS41-207ENST00000439468 LARP4Q71RC2 724 aaKnown RBP eCLIP4.79□□□□□ -1.64
VPS41-207ENST00000439468 C11orf74Q86VG3 221 aa4.79□□□□□ -1.64
VPS41-207ENST00000439468 EFHBQ8N7U6 833 aa4.79□□□□□ -1.64
VPS41-207ENST00000439468 E2F7Q96AV8 911 aa4.79□□□□□ -1.64
VPS41-207ENST00000439468 OR14A2Q96R54 314 aa4.79□□□□□ -1.64
VPS41-207ENST00000439468 DPYSL5Q9BPU6 564 aa4.79□□□□□ -1.64
VPS41-207ENST00000439468 KRTAP3-1Q9BYR8 98 aa4.79□□□□□ -1.64
VPS41-207ENST00000439468 SEMA4AQ9H3S1 761 aa4.79□□□□□ -1.64
VPS41-207ENST00000439468 TOPORSQ9NS56 1045 aaPredicted RBP4.79□□□□□ -1.64
VPS41-207ENST00000439468 PUF60Q9UHX1 559 aaKnown RBP4.79□□□□□ -1.64
VPS41-207ENST00000439468 OAZ3Q9UMX2 235 aa4.79□□□□□ -1.64
VPS41-207ENST00000439468 APOBEC2Q9Y235 224 aaKnown RBP4.79□□□□□ -1.64
VPS41-207ENST00000439468 TNKSO95271 1327 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms