RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 H2AFZP0C0S5 128 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 LSP1P33241 339 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 CASP4P49662 377 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 H2AFVQ71UI9 128 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 VPS36Q86VN1 386 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 RASGEF1CQ8N431 466 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 POLR3CQ9BUI4 534 aaPredicted RBP17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 GCNT4Q9P109 453 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 SUCLA2Q9P2R7 463 aaPredicted RBP17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 CCDC188H7C350 402 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 DDX3XO00571 662 aaKnown RBP eCLIP17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 MSH4O15457 936 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 TBCAO75347 108 aaKnown RBP17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 EYA4O95677 639 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 NPEPPSP55786 919 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 TBC1D10BQ4KMP7 808 aaPredicted RBP17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 FAM83AQ86UY5 434 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 DNAAF5Q86Y56 855 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 SIAH1Q8IUQ4 282 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 OLIG1Q8TAK6 271 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 LMBR1Q8WVP7 490 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 BORCS6Q96GS4 357 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 PAGR1Q9BTK6 254 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 BHMT2Q9H2M3 363 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 TMBIM4Q9HC24 238 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 OLFML3Q9NRN5 406 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 HERC5Q9UII4 1024 aaKnown RBP17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 ZMYM2Q9UBW7 1377 aa17.85■□□□□ 0.45
CLCNKA-203ENST00000439316 SPDYE3A6NKU9 549 aa17.85■□□□□ 0.45
CLCNKA-203ENST00000439316 GFPT2O94808 682 aa17.85■□□□□ 0.45
CLCNKA-203ENST00000439316 GCNT3O95395 438 aa17.85■□□□□ 0.45
CLCNKA-203ENST00000439316 FERP16591 822 aa17.85■□□□□ 0.45
CLCNKA-203ENST00000439316 HLTFQ14527 1009 aaKnown RBP eCLIP17.85■□□□□ 0.45
CLCNKA-203ENST00000439316 RRP1BQ14684 758 aaKnown RBP17.85■□□□□ 0.45
CLCNKA-203ENST00000439316 ABCB5Q2M3G0 1257 aa17.85■□□□□ 0.45
CLCNKA-203ENST00000439316 TCERG1LQ5VWI1 586 aa17.85■□□□□ 0.45
CLCNKA-203ENST00000439316 B4GALNT4Q76KP1 1039 aa17.85■□□□□ 0.45
CLCNKA-203ENST00000439316 FBXO11Q86XK2 927 aa17.85■□□□□ 0.45
CLCNKA-203ENST00000439316 KCTD17Q8N5Z5 321 aa17.85■□□□□ 0.45
CLCNKA-203ENST00000439316 EPN3Q9H201 632 aa17.85■□□□□ 0.45
CLCNKA-203ENST00000439316 SAMM50Q9Y512 469 aa17.85■□□□□ 0.45
CLCNKA-203ENST00000439316 SRRM3A6NNA2 597 aaPredicted RBP17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 H0YGN5 161 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 SART1O43290 800 aaKnown RBP17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 GAP43P17677 238 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 HSD17B3P37058 310 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 JAG1P78504 1218 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 ITGB3BPQ13352 177 aaPredicted RBP17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 UAP1Q16222 522 aaPredicted RBP17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 NFIL3Q16649 462 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 CEP85LQ5SZL2 805 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 PEX26Q7Z412 305 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 MAATS1Q7Z4T9 603 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 SPATS2Q86XZ4 545 aaKnown RBP17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 SYCE1Q8N0S2 351 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 GMCL1P1Q8NEA9 526 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 LRRC45Q96CN5 670 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 BCAS3Q9H6U6 928 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 RABGAP1Q9Y3P9 1069 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 NFS1Q9Y697 457 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 NCANO14594 1321 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 EIF3DO15371 548 aaKnown RBP eCLIP17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 TGFB1I1O43294 461 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 PPP1R37O75864 691 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 GUCY1A3Q02108 690 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 CYP4A11Q02928 519 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 ICA1Q05084 483 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 PTGISQ16647 500 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 GJB7Q6PEY0 223 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 TMEM179Q6ZVK1 233 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 NT5DC3Q86UY8 548 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 GMCL1Q96IK5 515 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 EIF2AK1Q9BQI3 630 aaKnown RBP17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 AP1M1Q9BXS5 423 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 SLITRK6Q9H5Y7 841 aa17.84■□□□□ 0.45
CLCNKA-203ENST00000439316 ASTN2O75129 1339 aaPredicted RBP17.83■□□□□ 0.45
CLCNKA-203ENST00000439316 TMCO5BA8MYB1 307 aa17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 CLIC2O15247 247 aa17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 GH2P01242 217 aa17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 CYP3A4P08684 503 aa17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 YBX3P16989 372 aaKnown RBP eCLIP17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 MDH1P40925 334 aaKnown RBP17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 STAT1P42224 750 aa17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 SNAP25P60880 206 aa17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 KCNA1Q09470 495 aa17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 SYDE2Q5VT97 1194 aa17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 MIGA2Q7L4E1 593 aa17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 MICALL1Q8N3F8 863 aa17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 SLC30A5Q8TAD4 765 aa17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 LNX1Q8TBB1 728 aaPredicted RBP17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 U2AF1L4Q8WU68 220 aaKnown RBP17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 HES6Q96HZ4 224 aa17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 DDX47Q9H0S4 455 aaKnown RBP17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 NEUROG2Q9H2A3 272 aa17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 PGAP2Q9UHJ9 254 aa17.83■□□□□ 0.44
CLCNKA-203ENST00000439316 F5H6K3 240 aa17.82■□□□□ 0.44
CLCNKA-203ENST00000439316 EML1O00423 815 aa17.82■□□□□ 0.44
CLCNKA-203ENST00000439316 KRIT1O00522 736 aa17.82■□□□□ 0.44
CLCNKA-203ENST00000439316 OPLAHO14841 1288 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms