RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 PLAAQ9Y263 795 aa18.4■□□□□ 0.54
PTPRF-209ENST00000438120 GPC3P51654 580 aa18.4■□□□□ 0.54
PTPRF-209ENST00000438120 ANGPTL8Q6UXH0 198 aa18.4■□□□□ 0.54
PTPRF-209ENST00000438120 NSUN6Q8TEA1 469 aaKnown RBP18.4■□□□□ 0.54
PTPRF-209ENST00000438120 CEP72Q9P209 647 aa18.4■□□□□ 0.54
PTPRF-209ENST00000438120 AFF2P51816 1311 aa18.4■□□□□ 0.54
PTPRF-209ENST00000438120 GOLGA8QA0A0J9YX86 632 aa18.4■□□□□ 0.54
PTPRF-209ENST00000438120 GOLGA8OA6NCC3 632 aa18.4■□□□□ 0.54
PTPRF-209ENST00000438120 GOLGA8NF8WBI6 632 aa18.4■□□□□ 0.54
PTPRF-209ENST00000438120 NCK2O43639 380 aa18.4■□□□□ 0.54
PTPRF-209ENST00000438120 CYP19A1P11511 503 aaPredicted RBP18.4■□□□□ 0.54
PTPRF-209ENST00000438120 KRT33BQ14525 404 aa18.4■□□□□ 0.54
PTPRF-209ENST00000438120 QRICH1Q2TAL8 776 aa18.4■□□□□ 0.54
PTPRF-209ENST00000438120 RSBN1LQ6PCB5 846 aaPredicted RBP18.4■□□□□ 0.54
PTPRF-209ENST00000438120 F5H6K3 240 aa18.39■□□□□ 0.54
PTPRF-209ENST00000438120 KPNA2P52292 529 aaKnown RBP18.39■□□□□ 0.54
PTPRF-209ENST00000438120 KLRC3Q07444 240 aa18.39■□□□□ 0.54
PTPRF-209ENST00000438120 MB21D2Q8IYB1 491 aaPredicted RBP18.39■□□□□ 0.54
PTPRF-209ENST00000438120 HIPK4Q8NE63 616 aa18.39■□□□□ 0.54
PTPRF-209ENST00000438120 OCRLQ01968 901 aa18.39■□□□□ 0.53
PTPRF-209ENST00000438120 LCA5Q86VQ0 697 aa18.39■□□□□ 0.53
PTPRF-209ENST00000438120 THEM5Q8N1Q8 247 aa18.39■□□□□ 0.53
PTPRF-209ENST00000438120 WHAMMQ8TF30 809 aa18.39■□□□□ 0.53
PTPRF-209ENST00000438120 RRP15Q9Y3B9 282 aaKnown RBP18.39■□□□□ 0.53
PTPRF-209ENST00000438120 ADGRL3Q9HAR2 1447 aa18.39■□□□□ 0.53
PTPRF-209ENST00000438120 IQANK1A0A1B0GTG1 560 aa18.39■□□□□ 0.53
PTPRF-209ENST00000438120 ZBTB41Q5SVQ8 909 aa18.39■□□□□ 0.53
PTPRF-209ENST00000438120 MCPH1Q8NEM0 835 aa18.39■□□□□ 0.53
PTPRF-209ENST00000438120 KRT82Q9NSB4 513 aa18.39■□□□□ 0.53
PTPRF-209ENST00000438120 PTCH1Q13635 1447 aa18.39■□□□□ 0.53
PTPRF-209ENST00000438120 M0QYV0 167 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 HUS1O60921 280 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 PHKA2P46019 1235 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 STAG2Q8N3U4 1231 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 ANLNQ9NQW6 1124 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 SLC8A2Q9UPR5 921 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 LGALS16A8MUM7 142 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 GRM4Q14833 912 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 NUGGCQ68CJ6 796 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 INPP1P49441 399 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 PODNQ7Z5L7 613 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 TBC1D22BQ9NU19 505 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 UBE4BO95155 1302 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 SCARF1Q14162 830 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 ANKRD20A4Q4UJ75 823 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 ANKRD20A8PQ5CZ79 823 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 ANKRD20A2Q5SQ80 823 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 ANKRD20A1Q5TYW2 823 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 TMEM35BQ8NCS4 154 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 POLR3FQ9H1D9 316 aaPredicted RBP18.38■□□□□ 0.53
PTPRF-209ENST00000438120 FOXN1O15353 648 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 TTC25Q96NG3 672 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 KLC2Q9H0B6 622 aa18.38■□□□□ 0.53
PTPRF-209ENST00000438120 TSR3Q9UJK0 312 aaKnown RBP18.38■□□□□ 0.53
PTPRF-209ENST00000438120 CCDC151A5D8V7 595 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 GSG1L2A8MUP6 293 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 TRMT10CQ7L0Y3 403 aaKnown RBP18.37■□□□□ 0.53
PTPRF-209ENST00000438120 TOPORSQ9NS56 1045 aaPredicted RBP18.37■□□□□ 0.53
PTPRF-209ENST00000438120 PACSIN2Q9UNF0 486 aaPredicted RBP18.37■□□□□ 0.53
PTPRF-209ENST00000438120 A0A0G2JND7 137 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 ZRANB2O95218 330 aaKnown RBP eCLIP18.37■□□□□ 0.533e-7■■■■■ 46.6
PTPRF-209ENST00000438120 ADORA2BP29275 332 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 GPC5P78333 572 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 LXNQ9BS40 222 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 RNF181Q9P0P0 153 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 HSPA4LO95757 839 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 KLC3Q6P597 504 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 CIITAP33076 1130 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 VAMP7P51809 220 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 KNOP1Q1ED39 458 aaKnown RBP18.37■□□□□ 0.53
PTPRF-209ENST00000438120 NUP85Q9BW27 656 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 FSD1LQ9BXM9 530 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 CNOT10Q9H9A5 744 aaKnown RBP18.37■□□□□ 0.53
PTPRF-209ENST00000438120 MLXIPLQ9NP71 852 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 SEC23IPQ9Y6Y8 1000 aaKnown RBP18.37■□□□□ 0.53
PTPRF-209ENST00000438120 ATP8B1O43520 1251 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 KITP10721 976 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 AKR1B1P15121 316 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 KIF19Q2TAC6 998 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 FAM167AQ96KS9 214 aa18.37■□□□□ 0.53
PTPRF-209ENST00000438120 FAF1Q9UNN5 650 aaPredicted RBP18.37■□□□□ 0.53
PTPRF-209ENST00000438120 FBXO38Q6PIJ6 1188 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 SPATA33Q96N06 139 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 XAB2Q9HCS7 855 aaKnown RBP18.36■□□□□ 0.53
PTPRF-209ENST00000438120 FBXO40Q9UH90 709 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 ORC6Q9Y5N6 252 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 TRIM49P0CI25 452 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 TRIM49CP0CI26 452 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 ESRRAP11474 423 aaPredicted RBP18.36■□□□□ 0.53
PTPRF-209ENST00000438120 NME3Q13232 169 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 LMBRD2Q68DH5 695 aaPredicted RBP18.36■□□□□ 0.53
PTPRF-209ENST00000438120 PSPC1Q8WXF1 523 aaKnown RBP18.36■□□□□ 0.53
PTPRF-209ENST00000438120 ELAC2Q9BQ52 826 aaKnown RBP18.36■□□□□ 0.53
PTPRF-209ENST00000438120 QARSP47897 775 aaKnown RBP18.36■□□□□ 0.53
PTPRF-209ENST00000438120 PIP4K2CQ8TBX8 421 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 BARHL2Q9NY43 387 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 STK36Q9NRP7 1315 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 KIF28PB7ZC32 967 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 FCER1AP12319 257 aa18.36■□□□□ 0.53
PTPRF-209ENST00000438120 KRT76Q01546 638 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms