RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 PCDH12Q9NPG4 1184 aa7.85□□□□□ -1.15
CCDC88A-206ENST00000430086 RTEL1Q9NZ71 1219 aa7.85□□□□□ -1.15
CCDC88A-206ENST00000430086 SAE1Q9UBE0 346 aaPredicted RBP7.85□□□□□ -1.15
CCDC88A-206ENST00000430086 KCNG1Q9UIX4 513 aa7.85□□□□□ -1.15
CCDC88A-206ENST00000430086 COL4A3BPQ9Y5P4 624 aa7.85□□□□□ -1.15
CCDC88A-206ENST00000430086 SLC4A7Q9Y6M7 1214 aa7.85□□□□□ -1.15
CCDC88A-206ENST00000430086 ARID1BQ8NFD5 2236 aaPredicted RBP7.84□□□□□ -1.15
CCDC88A-206ENST00000430086 A0A0G2JLL6 359 aaPredicted RBP7.84□□□□□ -1.15
CCDC88A-206ENST00000430086 OPHN1O60890 802 aa7.84□□□□□ -1.15
CCDC88A-206ENST00000430086 CNR2P34972 360 aa7.84□□□□□ -1.15
CCDC88A-206ENST00000430086 MANFP55145 182 aaKnown RBP7.84□□□□□ -1.15
CCDC88A-206ENST00000430086 ANTXR2P58335 489 aa7.84□□□□□ -1.15
CCDC88A-206ENST00000430086 NECAB2Q7Z6G3 386 aa7.84□□□□□ -1.15
CCDC88A-206ENST00000430086 FERMT2Q96AC1 680 aa7.84□□□□□ -1.15
CCDC88A-206ENST00000430086 TOPORSQ9NS56 1045 aaPredicted RBP7.84□□□□□ -1.15
CCDC88A-206ENST00000430086 PTPN22Q9Y2R2 807 aa7.84□□□□□ -1.15
CCDC88A-206ENST00000430086 NUMBLQ9Y6R0 609 aa7.84□□□□□ -1.15
CCDC88A-206ENST00000430086 MYPNQ86TC9 1320 aa7.83□□□□□ -1.16
CCDC88A-206ENST00000430086 ST20-MTHFSA0A0A6YYL1 179 aa7.83□□□□□ -1.16
CCDC88A-206ENST00000430086 PRSS38A1L453 326 aa7.83□□□□□ -1.16
CCDC88A-206ENST00000430086 B4GALT4O60513 344 aa7.83□□□□□ -1.16
CCDC88A-206ENST00000430086 PFKMP08237 780 aa7.83□□□□□ -1.16
CCDC88A-206ENST00000430086 SESN2P58004 480 aaPredicted RBP7.83□□□□□ -1.16
CCDC88A-206ENST00000430086 PCOLCEQ15113 449 aa7.83□□□□□ -1.16
CCDC88A-206ENST00000430086 PDCD1Q15116 288 aa7.83□□□□□ -1.16
CCDC88A-206ENST00000430086 PTPROQ16827 1216 aa7.83□□□□□ -1.16
CCDC88A-206ENST00000430086 RTKN2Q8IZC4 609 aa7.83□□□□□ -1.16
CCDC88A-206ENST00000430086 ADAM7Q9H2U9 754 aa7.83□□□□□ -1.16
CCDC88A-206ENST00000430086 SYNPO2Q9UMS6 1093 aa7.83□□□□□ -1.16
CCDC88A-206ENST00000430086 PPP2R3BQ9Y5P8 575 aa7.83□□□□□ -1.16
CCDC88A-206ENST00000430086 KRTAP4-8A0A0G2JLE6 195 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 K7ESF4 209 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 PRKD3O94806 890 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 CDK11BP21127 795 aaKnown RBP7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 MRE11P49959 708 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 MEOX1P50221 254 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 STAT5BP51692 787 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 EPHB4P54760 987 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 PPP2CBP62714 309 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 PPP2CAP67775 309 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 NFYCQ13952 458 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 UBXN11Q5T124 520 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 AGBL4Q5VU57 503 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 KLHDC10Q6PID8 442 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 RSAD2Q8WXG1 361 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 NKD2Q969F2 451 aaPredicted RBP7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 DYDC2Q96IM9 177 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 C20orf173Q96LM9 149 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 ACAP3Q96P50 834 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 OR10A2Q9H208 303 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 VTA1Q9NP79 307 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 POLR3BQ9NW08 1133 aaPredicted RBP7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 TMPRSS11EQ9UL52 423 aa7.82□□□□□ -1.16
CCDC88A-206ENST00000430086 PRICKLE3O43900 615 aaPredicted RBP7.81□□□□□ -1.16
CCDC88A-206ENST00000430086 CNOT4O95628 575 aaKnown RBP7.81□□□□□ -1.16
CCDC88A-206ENST00000430086 CDKN1CP49918 316 aaPredicted RBP7.81□□□□□ -1.16
CCDC88A-206ENST00000430086 RRADP55042 308 aa7.81□□□□□ -1.16
CCDC88A-206ENST00000430086 ZNF568Q3ZCX4 644 aa7.81□□□□□ -1.16
CCDC88A-206ENST00000430086 ARHGEF18Q6ZSZ5 1173 aa7.81□□□□□ -1.16
CCDC88A-206ENST00000430086 FERMT3Q86UX7 667 aa7.81□□□□□ -1.16
CCDC88A-206ENST00000430086 GFM2Q969S9 779 aaKnown RBP7.81□□□□□ -1.16
CCDC88A-206ENST00000430086 HIST1H2AHQ96KK5 128 aa7.81□□□□□ -1.16
CCDC88A-206ENST00000430086 HIST1H2AJQ99878 128 aa7.81□□□□□ -1.16
CCDC88A-206ENST00000430086 NOL10Q9BSC4 688 aaKnown RBP7.81□□□□□ -1.16
CCDC88A-206ENST00000430086 ANO3Q9BYT9 981 aa7.81□□□□□ -1.16
CCDC88A-206ENST00000430086 KIAA1683Q9H0B3 1180 aa7.81□□□□□ -1.16
CCDC88A-206ENST00000430086 PUS7LQ9H0K6 701 aaKnown RBP7.81□□□□□ -1.16
CCDC88A-206ENST00000430086 SEC61A2Q9H9S3 476 aa7.81□□□□□ -1.16
CCDC88A-206ENST00000430086 SLC5A4Q9NY91 659 aa7.81□□□□□ -1.16
CCDC88A-206ENST00000430086 MAGEL2Q9UJ55 1249 aa7.81□□□□□ -1.16
CCDC88A-206ENST00000430086 LAMTOR5O43504 91 aa7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 H2AFYO75367 372 aaKnown RBP7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 PCDH8O95206 1070 aa7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 PLATP00750 562 aa7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 GPR15P49685 360 aa7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 FSCN1Q16658 493 aaKnown RBP7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 CCDC178Q5BJE1 867 aa7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 USP30Q70CQ3 517 aa7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 CDYL2Q8N8U2 506 aa7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 PRPF38AQ8NAV1 312 aaKnown RBP7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 PPP1R14CQ8TAE6 165 aa7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 COG1Q8WTW3 980 aa7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 LMBR1Q8WVP7 490 aa7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 LPPQ93052 612 aa7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 AHCYL2Q96HN2 611 aaKnown RBP7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 GPATCH3Q96I76 525 aa7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 WDR92Q96MX6 357 aa7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 OSBPL6Q9BZF3 934 aa7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 CTDP1Q9Y5B0 961 aaPredicted RBP7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 PCDHB6Q9Y5E3 794 aa7.8□□□□□ -1.16
CCDC88A-206ENST00000430086 ARHGAP6O43182 974 aa7.79□□□□□ -1.16
CCDC88A-206ENST00000430086 IBSPP21815 317 aaPredicted RBP7.79□□□□□ -1.16
CCDC88A-206ENST00000430086 ERVK-21P61565 698 aa7.79□□□□□ -1.16
CCDC88A-206ENST00000430086 NFIXQ14938 502 aa7.79□□□□□ -1.16
CCDC88A-206ENST00000430086 TBC1D10BQ4KMP7 808 aaPredicted RBP7.79□□□□□ -1.16
CCDC88A-206ENST00000430086 LYSMD2Q8IV50 215 aa7.79□□□□□ -1.16
CCDC88A-206ENST00000430086 SLC41A1Q8IVJ1 513 aa7.79□□□□□ -1.16
CCDC88A-206ENST00000430086 ORAI2Q96SN7 254 aa7.79□□□□□ -1.16
CCDC88A-206ENST00000430086 MENTQ9BUN1 341 aa7.79□□□□□ -1.16
CCDC88A-206ENST00000430086 NOP58Q9Y2X3 529 aaKnown RBP7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms