RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 CNTNAP5Q8WYK1 1306 aa9.81□□□□□ -0.84
HDAC1-202ENST00000428704 CCDC196A0A1B0GTZ2 297 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 ZBTB43O43298 467 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 RNF40O75150 1001 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 CALM1P0DP23 149 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 CALM2P0DP24 149 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 CALM3P0DP25 149 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 IFNAR1P17181 557 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 ATF7P17544 494 aaPredicted RBP9.8□□□□□ -0.84
HDAC1-202ENST00000428704 KIF5BP33176 963 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 NRIP1P48552 1158 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 METAP2P50579 478 aaKnown RBP eCLIP9.8□□□□□ -0.84
HDAC1-202ENST00000428704 FUT2Q10981 343 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 TRIM71Q2Q1W2 868 aaKnown RBP9.8□□□□□ -0.84
HDAC1-202ENST00000428704 FAM173BQ6P4H8 233 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 SYNE3Q6ZMZ3 975 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 RBM23Q86U06 439 aaKnown RBP9.8□□□□□ -0.84
HDAC1-202ENST00000428704 MICU3Q86XE3 530 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 UBALD2Q8IYN6 164 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 NSUN6Q8TEA1 469 aaKnown RBP9.8□□□□□ -0.84
HDAC1-202ENST00000428704 SCFD2Q8WU76 684 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 SEPT8Q92599 483 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 PGBD1Q96JS3 809 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 C8orf76Q96K31 380 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 PDCD2LQ9BRP1 358 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 SEMA4AQ9H3S1 761 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 FAM217BQ9NTX9 383 aaPredicted RBP9.8□□□□□ -0.84
HDAC1-202ENST00000428704 RTEL1Q9NZ71 1219 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 TFIP11Q9UBB9 837 aaKnown RBP9.8□□□□□ -0.84
HDAC1-202ENST00000428704 HCSTQ9UBK5 93 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 HDAC6Q9UBN7 1215 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 RALYQ9UKM9 306 aaKnown RBP9.8□□□□□ -0.84
HDAC1-202ENST00000428704 SLC12A7Q9Y666 1083 aa9.8□□□□□ -0.84
HDAC1-202ENST00000428704 MYO7AQ13402 2215 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 hCG_1642624A0A1W2PR95 340 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 GOLGA6L4A6NEF3 574 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 RSPH10B2B2RC85 870 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 DTNBO60941 627 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 YEATS4O95619 227 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 NR3C2P08235 984 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 RSPH10BP0C881 870 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 TXNP10599 105 aaKnown RBP9.79□□□□□ -0.84
HDAC1-202ENST00000428704 SP100P23497 879 aaPredicted RBP9.79□□□□□ -0.84
HDAC1-202ENST00000428704 CLCN5P51795 746 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 ARHGAP1Q07960 439 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 PGM5Q15124 567 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 ANGPT1Q15389 498 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 RSPO4Q2I0M5 234 aaPredicted RBP9.79□□□□□ -0.84
HDAC1-202ENST00000428704 PLEKHG4Q58EX7 1191 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 ARHGEF16Q5VV41 709 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 ADGRD2Q7Z7M1 963 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 SAMD3Q8N6K7 520 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 FANCBQ8NB91 859 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 FLCNQ8NFG4 579 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 AFG1LQ8WV93 481 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 WASF1Q92558 559 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 WNT8BQ93098 351 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 RRP36Q96EU6 259 aaKnown RBP9.79□□□□□ -0.84
HDAC1-202ENST00000428704 IWS1Q96ST2 819 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 MPHOSPH6Q99547 160 aaKnown RBP9.79□□□□□ -0.84
HDAC1-202ENST00000428704 LZTS2Q9BRK4 669 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 ALG1Q9BT22 464 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 PLSCR2Q9NRY7 297 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 MAP3K20Q9NYL2 800 aaKnown RBP9.79□□□□□ -0.84
HDAC1-202ENST00000428704 SORCS3Q9UPU3 1222 aa9.79□□□□□ -0.84
HDAC1-202ENST00000428704 A0A1W2PQ27 194 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 A0A1W2PQ64 194 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 A0A1W2PQD8 194 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 B4DLN1 442 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 GCOM1H8Y6P7 765 aaPredicted RBP9.78□□□□□ -0.84
HDAC1-202ENST00000428704 MEIS2O14770 477 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 CAVIN2O95810 425 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 GLP2RO95838 553 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 MMP3P08254 477 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 POLR2MP0CAP2 368 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 CDC27P30260 824 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 THPOP40225 353 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 GNAQP50148 359 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 MRPL12P52815 198 aaKnown RBP9.78□□□□□ -0.84
HDAC1-202ENST00000428704 TRAF1Q13077 416 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 STXBP2Q15833 593 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 LY6KQ17RY6 165 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 ADALQ6DHV7 355 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 SEPT14Q6ZU15 432 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 CYP2W1Q8TAV3 490 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 KAT2BQ92831 832 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 USP28Q96RU2 1077 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 NUP62CLQ9H1M0 184 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 NAP1L2Q9ULW6 460 aaPredicted RBP9.78□□□□□ -0.84
HDAC1-202ENST00000428704 ADGRA3Q8IWK6 1321 aa9.78□□□□□ -0.84
HDAC1-202ENST00000428704 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.77□□□□□ -0.85
HDAC1-202ENST00000428704 GOLGA8AA7E2F4 631 aa9.77□□□□□ -0.85
HDAC1-202ENST00000428704 PIK3CDO00329 1044 aa9.77□□□□□ -0.85
HDAC1-202ENST00000428704 EIF3JO75822 258 aaKnown RBP9.77□□□□□ -0.85
HDAC1-202ENST00000428704 LINC00271P0C7V0 271 aa9.77□□□□□ -0.85
HDAC1-202ENST00000428704 CCDC192P0DO97 292 aa9.77□□□□□ -0.85
HDAC1-202ENST00000428704 LIG1P18858 919 aa9.77□□□□□ -0.85
HDAC1-202ENST00000428704 U2AF2P26368 475 aaKnown RBP eCLIP9.77□□□□□ -0.85
HDAC1-202ENST00000428704 MRPS9P82933 396 aaKnown RBP9.77□□□□□ -0.85
HDAC1-202ENST00000428704 ZNF200P98182 395 aaPredicted RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms