RNA–Protein interactions for RNA: ENST00000421085.6

CLCN4-203, Transcript of chloride voltage-gated channel 4, humanhuman

TSL 5 BASIC

Gene CLCN4, Length 6,534 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN4-203ENST00000421085 KIAA2013Q8IYS2 634 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 AS3MTQ9HBK9 375 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 FOXN1O15353 648 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 HDAC4P56524 1084 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 OXER1Q8TDS5 423 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 MS4A14Q96JA4 679 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 NUP85Q9BW27 656 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.18□□□□□ -0.3
CLCN4-203ENST00000421085 ASXL2Q76L83 1435 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 YEATS2Q9ULM3 1422 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 PRAMEF22A3QJZ6 481 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 PDIA2Q13087 525 aaKnown RBP13.18□□□□□ -0.3
CLCN4-203ENST00000421085 TEX9Q8N6V9 391 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 ZNF564Q8TBZ8 553 aaPredicted RBP13.18□□□□□ -0.3
CLCN4-203ENST00000421085 ARL8AQ96BM9 186 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 DYNLL2Q96FJ2 89 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 SEC16BQ96JE7 1060 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 ATP10DQ9P241 1426 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 RMDN2Q96LZ7 410 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 SNX12Q9UMY4 172 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 KRT14P02533 472 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 RNF25Q96BH1 459 aaPredicted RBP13.18□□□□□ -0.3
CLCN4-203ENST00000421085 CALR3Q96L12 384 aaKnown RBP13.18□□□□□ -0.3
CLCN4-203ENST00000421085 POLD4Q9HCU8 107 aa13.18□□□□□ -0.3
CLCN4-203ENST00000421085 USP17L3A6NCW0 530 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 USP17L4A6NCW7 530 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 CCDC22O60826 627 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 USP17L8P0C7I0 530 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 KCNA3P22001 575 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 OSTNP61366 133 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 GPS1Q13098 491 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 RSRC2Q7L4I2 434 aaKnown RBP13.17□□□□□ -0.3
CLCN4-203ENST00000421085 USP17L1Q7RTZ2 530 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 HNRNPH1P31943 449 aaKnown RBP13.17□□□□□ -0.3
CLCN4-203ENST00000421085 HIC1Q14526 733 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 PASD1Q8IV76 773 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 DHX38Q92620 1227 aaKnown RBP13.17□□□□□ -0.3
CLCN4-203ENST00000421085 PIH1D3Q9NQM4 214 aaKnown RBP13.17□□□□□ -0.3
CLCN4-203ENST00000421085 SH3GLB2Q9NR46 395 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 BICRAQ9NZM4 1560 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 SOX5P35711 763 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 CUL3Q13618 768 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 EFTUD2Q15029 972 aaKnown RBP eCLIP13.17□□□□□ -0.3
CLCN4-203ENST00000421085 STAG2Q8N3U4 1231 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 DACH2Q96NX9 599 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 ALG13Q9NP73 1137 aaKnown RBP13.17□□□□□ -0.3
CLCN4-203ENST00000421085 UBN1Q9NPG3 1134 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 DDX28Q9NUL7 540 aaKnown RBP13.17□□□□□ -0.3
CLCN4-203ENST00000421085 ZNF229Q9UJW7 825 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 PLEKHG3A1L390 1219 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 PPP1R12AO14974 1030 aaPredicted RBP13.17□□□□□ -0.3
CLCN4-203ENST00000421085 NR3C1P04150 777 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 PMLP29590 882 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 PMS1P54277 932 aaKnown RBP13.17□□□□□ -0.3
CLCN4-203ENST00000421085 LRRC36Q1X8D7 754 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 MDH1BQ5I0G3 518 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 RABGAP1LQ5R372 815 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 CCDC17Q96LX7 622 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 ZNF408Q9H9D4 720 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 PSD3Q9NYI0 1048 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 ALDH1B1P30837 517 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 BYSLQ13895 437 aaKnown RBP13.17□□□□□ -0.3
CLCN4-203ENST00000421085 PPP6R3Q5H9R7 873 aaPredicted RBP13.17□□□□□ -0.3
CLCN4-203ENST00000421085 SPOUT1Q5T280 376 aaKnown RBP13.17□□□□□ -0.3
CLCN4-203ENST00000421085 SHC4Q6S5L8 630 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 CCNI2Q6ZMN8 369 aaPredicted RBP13.17□□□□□ -0.3
CLCN4-203ENST00000421085 SEPT8Q92599 483 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 GFM2Q969S9 779 aaKnown RBP13.17□□□□□ -0.3
CLCN4-203ENST00000421085 ZBTB18Q99592 522 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 PTCH1Q13635 1447 aa13.17□□□□□ -0.3
CLCN4-203ENST00000421085 MIS18BP1Q6P0N0 1132 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 ANGPTL8Q6UXH0 198 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 TTC13Q8NBP0 860 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 EIF4G3O43432 1585 aaKnown RBP13.16□□□□□ -0.3
CLCN4-203ENST00000421085 SYNMO15061 1565 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 POTEMA6NI47 508 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 ENO1P06733 434 aaKnown RBP13.16□□□□□ -0.3
CLCN4-203ENST00000421085 LSP1P33241 339 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 CORO7P57737 925 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 KDSRQ06136 332 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 DHX34Q14147 1143 aaKnown RBP13.16□□□□□ -0.3
CLCN4-203ENST00000421085 OLFML2BQ68BL8 750 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 C1orf54Q8WWF1 131 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 USP6NLQ92738 828 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 OLA1Q9NTK5 396 aaKnown RBP13.16□□□□□ -0.3
CLCN4-203ENST00000421085 PAIP2BQ9ULR5 123 aaKnown RBP13.16□□□□□ -0.3
CLCN4-203ENST00000421085 HNRNPCL2B2RXH8 293 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 PPIP5K2O43314 1243 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 HNRNPCL1O60812 293 aaKnown RBP13.16□□□□□ -0.3
CLCN4-203ENST00000421085 SEC24DO94855 1032 aaPredicted RBP13.16□□□□□ -0.3
CLCN4-203ENST00000421085 CCND1P24385 295 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 ZC3H15Q8WU90 426 aaKnown RBP13.16□□□□□ -0.3
CLCN4-203ENST00000421085 THAP11Q96EK4 314 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 VPS39Q96JC1 886 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 NGRNQ9NPE2 291 aaKnown RBP13.16□□□□□ -0.3
CLCN4-203ENST00000421085 AKT3Q9Y243 479 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 USP15Q9Y4E8 981 aaPredicted RBP13.16□□□□□ -0.3
CLCN4-203ENST00000421085 FTLP02792 175 aaPredicted RBP13.16□□□□□ -0.3
CLCN4-203ENST00000421085 POLD1P28340 1107 aa13.16□□□□□ -0.3
CLCN4-203ENST00000421085 ALCAMQ13740 583 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms